The use of ectopic volar fibroblasts to modify skin identity III
Single-cell RNA-seq · human · 16 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart. Read from the summary: GEO's own type field only says 'expression profiling by sequencing', so confirm it in the paper.
- Organism
- Homo sapiens (human)
- Samples
- 16 samples: 16 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- The use of ectopic volar fibroblasts to modify skin identityScience (New York, N.Y.) · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE231997_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA970380 and SRA study SRP436550. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 16 sample titles: 16 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7307186 Scalp fibroblast from patient# 136-22_no preesure
- GSM7307187 Scalp fibroblast from patient# 136-22_preesure
- GSM7307188 Sole fibroblast from patient# 136-22_no preesure
- GSM7307189 Sole fibroblast from patient# 136-22_preesure
- GSM7307190 Scalp fibroblast from patient# 136-42_no preesure
- GSM7307191 Scalp fibroblast from patient# 136-42_preesure
- GSM7307192 Sole fibroblast from patient# 136-42_no preesure
- GSM7307193 Sole fibroblast from patient# 136-42_preesure
- GSM7307194 Scalp fibroblast from patient# 136-43_no preesure
- GSM7307195 Scalp fibroblast from patient# 136-43_preesure
- GSM7307196 Sole fibroblast from patient# 136-43_no preesure
- GSM7307197 Sole fibroblast from patient# 136-43_preesure
- GSM7307198 Scalp fibroblast from patient# 136-44_no preesure
- GSM7307199 Scalp fibroblast from patient# 136-44_preesure
- GSM7307200 Sole fibroblast from patient# 136-44_no preesure
- GSM7307201 Sole fibroblast from patient# 136-44_preesure
- GSE231998 The use of ectopic volar fibroblasts to modify skin identity 49 samples shares fibroblasts, identity, ectopic, modify, volar, skin
- GSE262112 Mechanical stretching of keloid and normal skin fibroblasts 20 samples shares fibroblasts, skin
- GSE330762 Kabuki syndrome type I fibroblast multi-omics dataset: bulk RNA-seq profiles from primary skin fibroblasts 19 samples shares fibroblasts, skin
- GSE272972 Critical role for the TGF-β1/mTORC1 signalling axis in defining the transcriptional identity of CTHRC1+ pathologic fibroblasts in idiopathic pulmonary fibrosis 18 samples shares fibroblasts, identity
- GSE269317 Reduced WNT4 expression in normal skin fibroblasts leads to ‘Dupuytren-like’ changes in the transcriptome 16 samples shares fibroblasts, skin
- GSE305928 Effect of latrunculin A on gene expression in human skin dermal fibroblasts 12 samples shares fibroblasts, skin
- GSE261892 Australian Chronic Allograft Dysfunction III 123 samples shares iii
- GSE333557 RNA Polymerase III inhinition leads to changes in protein coding gene expression 54 samples shares iii
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.