The use of ectopic volar fibroblasts to modify skin identity
RNA-seq (gene expression) · human · 49 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 49 samples: 49 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- The use of ectopic volar fibroblasts to modify skin identityScience (New York, N.Y.) · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE231998_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA970375 and SRA study SRP436549. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 49 sample titles: 49 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7307154 patient# 136-64 vehicle injection site at 2-week post-injection time point
- GSM7307155 patient# 136-64 scalp fibroblast injection site at 2-week post-injection time point
- GSM7307156 patient# 136-64 sole fibroblast injection site at 2-week post-injection time point
- GSM7307157 patient# 136-68 vehicle injection site at 2-month post-injection time point
- GSM7307158 patient# 136-68 scalp fibroblast injection site at 2-month post-injection time point
- GSM7307159 patient# 136-68 sole fibroblast injection site at 2-month post-injection time point
- GSM7307160 patient# 136-47 vehicle injection site at 5-month post-injection time point
- GSM7307161 patient# 136-47 scalp fibroblast injection site at 5-month post-injection time point
- GSM7307162 patient# 136-47 sole fibroblast injection site at 5-month post-injection time point
- GSM7307163 patient# 136-62 vehicle injection site at 17-month post-injection time point
- GSM7307164 patient# 136-62 scalp fibroblast injection site at 17-month post-injection time point
- GSM7307165 patient# 136-62 sole fibroblast injection site at 17-month post-injection time point
- GSM7307166 patient# 136-47 scalp fibroblast
- GSM7307167 patient# 136-47 sole fibroblast
- GSM7307168 patient# 136-26 vehicle injection site
- GSM7307169 patient# 136-26 scalp fibroblast injection site
- GSM7307170 patient# 136-26 sole fibroblast injection site
- GSM7307171 patient# 136-27 vehicle injection site
- GSM7307172 patient# 136-27 scalp fibroblast injection site
- GSM7307173 patient# 136-27 sole fibroblast injection site
- GSM7307174 patient# 136-28 vehicle injection site
- GSM7307175 patient# 136-28 scalp fibroblast injection site
- GSM7307176 patient# 136-28 sole fibroblast injection site
- GSM7307177 patient# 136- 43 vehicle injection site
- GSM7307178 patient# 136-43 scalp fibroblast injection site
- GSM7307179 patient# 136-43 sole fibroblast injection site
- GSM7307180 patient# 136-45 vehicle injection site
- GSM7307181 patient# 136-45 scalp fibroblast injection site
- GSM7307182 patient# 136-45 sole fibroblast injection site
- GSM7307183 patient# 136-46 vehicle injection site
- GSM7307184 patient# 136-46 scalp fibroblast injection site
- GSM7307185 patient# 136-46 sole fibroblast injection site
- GSM7307186 Scalp fibroblast from patient# 136-22_no preesure
- GSM7307187 Scalp fibroblast from patient# 136-22_preesure
- GSM7307188 Sole fibroblast from patient# 136-22_no preesure
- GSM7307189 Sole fibroblast from patient# 136-22_preesure
- GSM7307190 Scalp fibroblast from patient# 136-42_no preesure
- GSM7307191 Scalp fibroblast from patient# 136-42_preesure
- GSM7307192 Sole fibroblast from patient# 136-42_no preesure
- GSM7307193 Sole fibroblast from patient# 136-42_preesure
+ 9 more — browse all 49 samples with per-sample file links →
- GSE231997 The use of ectopic volar fibroblasts to modify skin identity III 16 samples shares fibroblasts, identity, ectopic, modify, volar, skin
- GSE262112 Mechanical stretching of keloid and normal skin fibroblasts 20 samples shares fibroblasts, skin
- GSE330762 Kabuki syndrome type I fibroblast multi-omics dataset: bulk RNA-seq profiles from primary skin fibroblasts 19 samples shares fibroblasts, skin
- GSE272972 Critical role for the TGF-β1/mTORC1 signalling axis in defining the transcriptional identity of CTHRC1+ pathologic fibroblasts in idiopathic pulmonary fibrosis 18 samples shares fibroblasts, identity
- GSE269317 Reduced WNT4 expression in normal skin fibroblasts leads to ‘Dupuytren-like’ changes in the transcriptome 16 samples shares fibroblasts, skin
- GSE255684 Functional analysis and transcriptome profile of meninges and skin fibroblasts from human aged donors 15 samples shares fibroblasts, skin
- GSE305928 Effect of latrunculin A on gene expression in human skin dermal fibroblasts 12 samples shares fibroblasts, skin
- GSE299256 Positionally distinct interferon-stimulated dermal immune-acting fibroblasts promote neutrophil recruitment in Sweet's syndrome. 116 samples shares fibroblasts
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.