Innate immune memory after brain injury drives inflammatory cardiac dysfunction II
RNA-seq (gene expression) · human · 20 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 20 samples: 13 × heart sample, IS patient vs 7 × heart sample, control patientGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Innate immune memory after brain injury drives inflammatory cardiac dysfunctionCell · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE232550_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA972710 and SRA study SRP437730. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 20 samples.
How we read this: 2 replicated groups read from 20 sample titles; they account for 20 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7350140 heart sample, IS patient 1 heart sample, IS patient
- GSM7350141 heart sample, control patient 2 heart sample, control p…
- GSM7350142 heart sample, IS patient 3 heart sample, IS patient
- GSM7350143 heart sample, IS patient 4 heart sample, IS patient
- GSM7350144 heart sample, IS patient 5 heart sample, IS patient
- GSM7350145 heart sample, IS patient 6 heart sample, IS patient
- GSM7350146 heart sample, control patient 7 heart sample, control p…
- GSM7350147 heart sample, IS patient 8 heart sample, IS patient
- GSM7350148 heart sample, IS patient 9 heart sample, IS patient
- GSM7350149 heart sample, IS patient 10 heart sample, IS patient
- GSM7350150 heart sample, IS patient 11 heart sample, IS patient
- GSM7350151 heart sample, IS patient 12 heart sample, IS patient
- GSM7350152 heart sample, IS patient 13 heart sample, IS patient
- GSM7350153 heart sample, IS patient 14 heart sample, IS patient
- GSM7350154 heart sample, control patient 15 heart sample, control p…
- GSM7350155 heart sample, IS patient 16 heart sample, IS patient
- GSM7350156 heart sample, control patient 17 heart sample, control p…
- GSM7350157 heart sample, control patient 18 heart sample, control p…
- GSM7350158 heart sample, control patient 19 heart sample, control p…
- GSM7350159 heart sample, control patient 20 heart sample, control p…
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.