Fractionation of sgControl, sgIfih1 and sgGgnbp2 in HoxA9 immortalized Rosa26-CreERT2 Adar1fl/E861A immortalised myeloid cells.
RNA-seq (gene expression) · mouse · 54 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 54 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- GGNBP2 regulates MDA5 sensing triggered by self double-stranded RNA following loss of ADAR1 editingScience immunology · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE233452_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA976290 and SRA study SRP439554. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 54 more — browse all 54 samples with per-sample file links →
- GSE233590 Tamoxifen timecourse in HoxA9 immortalized R26-CreERT2 Adar1fl/+ and R26-CreERT2 Adar1fl/E861A myeliod cell lines. 16 samples shares adar1fl, hoxa9, e861a, immortalized
- GSE233671 Genome-wide CRISPR screen of HoxA9 immortalised R26-CreERT2 Adar1fl/+ and R26-CreERT2 Adar1fl/E861A cells 12 samples shares adar1fl, hoxa9, e861a
- GSE233934 Ggnbp2 and Ifih1 knockout in HoxA9 immortalised R26-CreERT2 Adar1fl/E861A myeliod cell line. 7 samples shares adar1fl, hoxa9, e861a
- GSE233991 Ggnbp2 knockout in HoxA9 immortalised R26-CreERT2 Adar1fl/+ myeliod cell line. 6 samples shares adar1fl, hoxa9
- GSE84874 Time course of myeloid differentiation in the Lysozyme-GFP ER-HoxA9 cells following estradiol withdrawal 24 samples shares hoxa9
- GSE199756 A pro B cell population forms the apex of the leukemic hierarchy in Hoxa9/Meis1-dependent AML 6 samples shares hoxa9
- GSE295661 Single cell expression profiling of brain tumors in mice intracranially injected with 2x105 glioblastoma tumor cells isolated from NTv-a;hUBC-CreERT2;Adar1flox/flox mice and treated with tamoxifen to induce Adar1 deletion, or with vehicle control. 6 samples shares adar1fl
- GSE204676 A pro B cell population forms the apex of the leukemic hierarchy in Hoxa9/Meis1-dependent AML 2 samples shares hoxa9
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.