Tracking rare single donor and recipient immune and leukemia cells after allogeneic hematopoietic cell transplantation using mitochondrial DNA mutations
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 85 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 85 samples: 79 distinct titles, 3 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Tracking Rare Single Donor and Recipient Immune and Leukemia Cells after Allogeneic Hematopoietic Cell Transplantation Using Mitochondrial DNA MutationsBlood cancer discovery · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE234558_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA982039 and SRA study SRP441981. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 85 sample titles: 79 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7470621 MART1.1 scATAC-seq ratio 1:3
- GSM7470622 MART1.1 TSA ratio 1:3
- GSM7470623 MART1.1 TSB ratio 1:3
- GSM7470624 MART1.2 scATAC-seq ratio 1:30
- GSM7470625 MART1.2 TSA ratio 1:30
- GSM7470626 MART1.2 TSB ratio 1:30
- GSM7470627 MART1.3 scATAC-seq ratio 1:300
- GSM7470628 MART1.3 TSA ratio 1:300
- GSM7470629 MART1.3 TSB ratio 1:300
- GSM7470630 IST1.1 PB scATAC-seq
- GSM7470631 IST1.1 PB TSA
- GSM7470632 IST1.1 PB TSB
- GSM7470633 IST1.2 PB scATAC-seq
- GSM7470634 IST1.2 PB TSA
- GSM7470635 IST1.2 PB TSB
- GSM7470636 IST1.1 BM scATAC-seq
- GSM7470637 IST1.1 BM TSA
- GSM7470638 IST1.1 BM TSB
- GSM7470639 IST1.2 BM scATAC-seq
- GSM7470640 IST1.2 BM TSA
- GSM7470641 IST1.2 BM TSB
- GSM7470642 IST2.1 scATAC-seq
- GSM7470643 IST2.1 TSA
- GSM7470644 IST2.1 TSB
- GSM7470645 IST2.2 scATAC-seq
- GSM7470646 IST2.2 TSA
- GSM7470647 IST2.2 TSB
- GSM7470648 IST3.1 scATAC-seq
- GSM7470649 IST3.1 TSA
- GSM7470650 IST3.1 TSB
- GSM7470651 IST3.2 scATAC-seq
- GSM7470652 IST3.2 TSA
- GSM7470653 IST3.2 TSB
- GSM7470654 IST4.1 scATAC-seq
- GSM7470655 IST4.1 TSA
- GSM7470656 IST4.1 TSB
- GSM7470657 IST4.2 scATAC-seq
- GSM7470658 IST4.2 TSA
- GSM7470659 IST4.2 TSB
- GSM7470688 AML1010.1 scATAC-seq
+ 45 more — browse all 85 samples with per-sample file links →
- GSE234552 Tracking of donor and recipient immune and leukemia phenotypes after allogeneic stem cell transplantation using mitochondrial DNA mutations. [ASAP-Seq 2] 30 samples shares transplantation, mitochondrial, allogeneic, recipient, mutations, tracking, leukemia
- GSE234555 Tracking of donor and recipient immune and leukemia phenotypes after allogeneic stem cell transplantation using mitochondrial DNA mutations. [ASAP-Seq 3] 14 samples shares transplantation, mitochondrial, allogeneic, recipient, mutations, tracking, leukemia
- GSE234556 Tracking of donor and recipient immune and leukemia phenotypes after allogeneic stem cell transplantation using mitochondrial DNA mutations. [Tapestri] 10 samples shares transplantation, mitochondrial, allogeneic, recipient, mutations, tracking, leukemia
- GSE234551 Tracking of donor and recipient immune and leukemia phenotypes after allogeneic stem cell transplantation using mitochondrial DNA mutations. [ASAP-Seq 1] 9 samples shares transplantation, mitochondrial, allogeneic, recipient, mutations, tracking, leukemia
- GSE290864 Immune cell sequencing after allogeneic hematopoietic cell transplantation [scRNA-seq] 34 samples shares transplantation, hematopoietic, allogeneic
- GSE295359 Mega-scale single-cell profiling reveals novel biomarkers associated with acute GvHD after allogeneic hematopoietic stem cell transplantation 15 samples shares transplantation, hematopoietic, allogeneic
- GSE317520 Mitochondrial DNA Mutations Drive Tumor Heterogeneity in Papillary Thyroid Carcinoma 92 samples shares mitochondrial, mutations
- GSE303350 JARID2 Inhibition Reprograms Human Hematopoietic Progenitor Cells To Enhance Bone Marrow Transplantation 88 samples shares transplantation, hematopoietic
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.