CD14 Serves as a Predicted Marker for Coronary Artery Lesions in Kawasaki Disease
RNA-seq (gene expression) · human · 24 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 24 samples: 24 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE237851_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA996938 and SRA study SRP450584. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 24 sample titles: 24 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7655288 KD-CALs, acute stage 202108A
- GSM7655289 KD-CALs, acute stage 202109A
- GSM7655290 KD-CALs, acute stage 202136A
- GSM7655291 KD-CALs, acute stage 202138A
- GSM7655292 KD-CALs, acute stage 202140A
- GSM7655293 KD-CALs, acute stage 202141A
- GSM7655294 KD-CALs, subacute stage 202108B
- GSM7655295 KD-CALs, subacute stage 202109B
- GSM7655296 KD-CALs, subacute stage 202136B
- GSM7655297 KD-CALs, subacute stage 202138B
- GSM7655298 KD-CALs, subacute stage 202140B
- GSM7655299 KD-CALs, subacute stage 202141B
- GSM7655300 KD-nCALs, acute stage 202102A
- GSM7655301 KD-nCALs, acute stage 202104A
- GSM7655302 KD-nCALs, acute stage 202129A
- GSM7655303 KD-nCALs, acute stage 202131A
- GSM7655304 KD-nCALs, acute stage 202134A
- GSM7655305 KD-nCALs, acute stage 202135A
- GSM7655306 KD-nCALs, subacute stage 202102B
- GSM7655307 KD-nCALs, subacute stage 202104B
- GSM7655308 KD-nCALs, subacute stage 202129B
- GSM7655309 KD-nCALs, subacute stage 202131B
- GSM7655310 KD-nCALs, subacute stage 202134B
- GSM7655311 KD-nCALs, subacute stage 202135B
- GSE279783 Autoreactive effector Treg cells with a compromised regulatory program in patients with coronary artery disease 144 samples shares coronary, artery
- GSE310095 Whole Blood Transcriptomics Differentiates Circulating Gene Expression Between Coronary Artery Disease and Peripheral Artery Disease 71 samples shares coronary, artery
- GSE210522 High-content CRISPR screens link coronary artery disease genes to endothelial cell programs [RNAseq] 52 samples shares coronary, artery
- GSE289957 Differential Gene Expression related to Telomere Length in Arterial Wall Tissues and Granulocytes of Patients with Coronary Artery Disease 34 samples shares coronary, artery
- GSE262161 Pericardial Fluid of Patients with Coronary Artery Disease Can Drive Fibrosis via TGF-Beta Signalling Pathway 24 samples shares coronary, artery
- GSE296137 Improved Small Interfering RNA Therapy Targeting the Long, Non-Coding RNA SMILR For Therapeutic Intervention in Coronary Artery Bypass Graft Failure 20 samples shares coronary, artery
- GSE311133 Transcriptome analysis of human coronary artery smooth muscle cells under pro-differentiation and pro-dedifferentiation treatments 15 samples shares coronary, artery
- GSE222118 Functional characterization of a heat shock factor regulated enhancer at coronary artery disease associated locus that controls CALCRL expression in endothelial cells 14 samples shares coronary, artery
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.