ABI1 regulates transcriptional activity of Androgen Receptor by novel DNA and AR binding mechanism [RNA-seq]
RNA-seq (gene expression) · human · 18 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 18 samples: 18 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE238112_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA997980 and SRA study SRP451111. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 18 sample titles: 18 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7658765 LNC-parent-untreated-1_S1_L001_R1_001.fastq.gz
- GSM7658766 LNC-parent-untreated-2_S2_L001_R1_001.fastq.gz
- GSM7658767 LNC-parent-untreated-3_S3_L001_R1_001.fastq.gz
- GSM7658768 LNC-parent-R1881-1_S4_L001_R1_001.fastq.gz
- GSM7658769 LNC-parent-R1881-2_S5_L001_R1_001.fastq.gz
- GSM7658770 LNC-parent-R1881-3_S6_L001_R1_001.fastq.gz
- GSM7658771 LNC-KO15-untreated-1_S7_L001_R1_001.fastq.gz
- GSM7658772 LNC-KO15-untreated-2_S8_L001_R1_001.fastq.gz
- GSM7658773 LNC-KO15-untreated-3_S9_L001_R1_001.fastq.gz
- GSM7658774 LNC-KO15-R1881-1_S10_L001_R1_001.fastq.gz
- GSM7658775 LNC-KO15-R1881-2_S11_L001_R1_001.fastq.gz
- GSM7658776 LNC-KO15-R1881-3_S12_L001_R1_001.fastq.gz
- GSM7658777 LNC-Iso2-untreated-1_S13_L001_R1_001.fastq.gz
- GSM7658778 LNC-Iso2-untreated-2_S14_L001_R1_001.fastq.gz
- GSM7658779 LNC-Iso2-untreated-3_S15_L001_R1_001.fastq.gz
- GSM7658780 LNC-Iso2-R1881-1_S16_L001_R1_001.fastq.gz
- GSM7658781 LNC-Iso2-R1881-2_S17_L001_R1_001.fastq.gz
- GSM7658782 LNC-Iso2-R1881-3_S18_L001_R1_001.fastq.gz
- GSE238114 ABI1 regulates transcriptional activity of Androgen Receptor by novel DNA and AR binding mechanism 25 samples shares abi1, activity, androgen, receptor, binding
- GSE287902 BPTF regulstes androgen receptor activity by enhancing chromatin accessibility and stabilizing the AR-FOXA1 interaction [Cut&Run] 40 samples shares activity, androgen, receptor
- GSE242941 Transcriptional profiling of skin cancer NK cells reveals the elevated glucocorticoid receptor activity alters their pro-inflammatory features. 36 samples shares activity, receptor
- GSE222196 Treatment of prostate cancer cell lines with Androgen Receptor and Receptor Tyrosine Kinase inhibitors 246 samples shares androgen, receptor
- GSE280267 Glycine Receptor Activity in β Cells Is Downregulated in Type 2 Diabetes and After High Glucose Culture 199 samples shares activity, receptor
- GSE314304 IL-11 receptor is a novel target for drug development with pharmacological activity in fibro-inflammatory disease 96 samples shares activity, receptor
- GSE284664 RESET: A reversible TCR-coupled antigen receptor with superior targeting sensitivity and pharmacologically controlled anti-tumor activity 62 samples shares activity, receptor
- GSE310672 Progesterone receptors drive advanced breast cancer phenotypes including circulating tumor- and stem-like cell expansion in the context of ESR1 mutation [RNA-seq] 48 samples shares receptor, rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.