Functional analysis of membrane-associated scaffolding tight junction (TJ) proteins in tumorigenic characteristics of B16-F10 mouse melanoma cells.
RNA-seq (gene expression) · mouse · 3 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 3 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE240070_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1002240 and SRA study SRP453352. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 3 more — browse all 3 samples with per-sample file links →
- GSE189489 RNAseq data of mouse B16-F10 melanoma cell lines after siEzh2 knockdown or GSK126 methyl-transferase inhibitor or DZNep treatment 15 samples shares b16-f10, melanoma
- GSE206472 Effect of depletion of HOIP on gene expression during B16-F10 melanoma tumor development in immunedeficinet mice. 8 samples shares b16-f10, melanoma
- GSE297168 Histone ChIP-Seq of B16-F10 melanoma cell lines (mouse) 4 samples shares b16-f10, melanoma
- GSE221549 Targeting postsynaptic glutamate receptor scaffolding proteins PSD-95 and PICK1 for obesity treatment 47 samples shares scaffolding, proteins
- GSE294715 The membrane-associated ubiquitin ligase MARCHF8 promotes cancer immune evasion by degrading MHC class I proteins 3 samples shares membrane-associated, proteins
- GSE248478 RNAseq analysis of IL-18 WT- and IL-18 D69A-overexpressing B16-F10 tumors 10 samples shares b16-f10
- GSE249142 Transcriptomics of PTEN knockout B16-F10 cells in C57BL/6J mice model treated with PTEN 8 samples shares b16-f10
- GSE287577 scRNA-seq of tumor-infiltrating CD45+ cells from B16-F10 tumor-bearing mice treated with vehicle and DOPAC. 2 samples shares b16-f10
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.