Transcriptomic changes in eutopic endometrium and ectopic lesions in mouse model during progression of endometriosis-related infertility
RNA-seq (gene expression) · mouse · 24 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 24 samples: 6 conditions, mostly with about 4 replicates eachGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Transcriptomic changes in eutopic endometrium and ectopic lesions during endometriosis progression in a mouse modelF&S science · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE240392_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1003491 and SRA study SRP454076. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 24 samples.
How we read this: 6 replicated groups read from 24 sample titles; they account for 24 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7697371 3M_Eutopic_1 3M_Eutopic
- GSM7697372 3M_Eutopic_2 3M_Eutopic
- GSM7697373 3M_Eutopic_3 3M_Eutopic
- GSM7697374 3M_Eutopic_4 3M_Eutopic
- GSM7697375 1M_Eutopic_1 1M_Eutopic
- GSM7697376 1M_Eutopic_2 1M_Eutopic
- GSM7697377 1M_Eutopic_3 1M_Eutopic
- GSM7697378 1M_Eutopic_4 1M_Eutopic
- GSM7697379 3M_Ectopic_1 3M_Ectopic
- GSM7697380 3M_Ectopic_2 3M_Ectopic
- GSM7697381 3M_Ectopic_3 3M_Ectopic
- GSM7697382 3M_Ectopic_4 3M_Ectopic
- GSM7697383 1M_Ectopic_1 1M_Ectopic
- GSM7697384 1M_Ectopic_2 1M_Ectopic
- GSM7697385 1M_Ectopic_3 1M_Ectopic
- GSM7697386 1M_Ectopic_4 1M_Ectopic
- GSM7697387 3M_Sham_1 3M_Sham
- GSM7697388 3M_Sham_2 3M_Sham
- GSM7697389 3M_Sham_3 3M_Sham
- GSM7697390 3M_Sham_4 3M_Sham
- GSM7697391 1M_Sham_1 1M_Sham
- GSM7697392 1M_Sham_2 1M_Sham
- GSM7697393 1M_Sham_3 1M_Sham
- GSM7697394 1M_Sham_4 1M_Sham
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.