Aberrant EZHIP Expression Drives Tumorigenesis in Osteosarcoma [CUT&RUN]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 16 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 16 samples: 16 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Aberrant EZHIP expression drives tumorigenesis in osteosarcomaNature communications · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE241104_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1006405 and SRA study SRP455677. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 16 sample titles: 16 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8747683 KHOS cell line EZHIP over expression rep 1 H3K27me3
- GSM8747685 KHOS cell line parental rep 1 H3K27me3
- GSM8747686 KHOS cell line parental rep 2 H3K27me3
- GSM8747687 MG63 cell line EZHIP over expression rep 1 H3K27me3
- GSM8747688 MG63 cell line EZHIP over expression rep 2 H3K27me3
- GSM8747689 MG63 cell line parental rep 1 H3K27me3
- GSM8747690 MG63 cell line parental rep 2 H3K27me3
- GSM8747691 U2OS cell line parental EZHIP rep 1 H3K27me3
- GSM8747692 U2OS cell line parental EZHIP rep 2 H3K27me3
- GSM8747693 U2OS cell line EZHIP over expression rep 1 H3K27me3
- GSM8747694 U2OS cell line EZHIP over expression rep 2 H3K27me3
- GSM8747695 U2OS cell line EZHIP knock out rep 1 H3K27me3
- GSM8747696 U2OS cell line EZHIP knock out rep 2 H3K27me3
- GSM8747697 KHOS cell line parental EZHIP Input
- GSM8747698 MG63 cell line parental EZHIP Input
- GSM8747699 U2OS cell line parental EZHIP Input
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- GSE303343 A unified network systems approach uncovers a core program underlying T follicular helper cell differentiation [CUT&RUN] 48 samples shares cut, run
- GSE287902 BPTF regulstes androgen receptor activity by enhancing chromatin accessibility and stabilizing the AR-FOXA1 interaction [Cut&Run] 40 samples shares cut, run
- GSE269555 Targeting the oncohistone-ASCL1 axis disrupts plasticity and suppresses pediatric gliomas [CUT&RUN] 39 samples shares cut, run
- GSE278910 Pooled CRISPR screens with joint single-nucleus chromatin accessibility and transcriptome profiling [CUT&RUN] 30 samples shares cut, run
- GSE301512 Chromatin topology dynamics of dexamethasone-treated trabecular meshwork identifies 78 causal genes for intraocular pressure and primary open angle glaucoma [CUT&Run] 30 samples shares cut, run
- GSE253893 PAX translocations remodel mitochondrial metabolism through altered leucine usage in rhabdomyosarcoma [Cut&Run] 28 samples shares cut, run
- GSE267470 Dual targeting of processive transcription for Myc-driven circuitry in medulloblastoma [CUT&RUN] 12 samples shares cut, run
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.