SUMOylated Etv1 establishes tumor-initiating cells during mammary oncogenesis [ChIP-seq]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 12 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 3 × Ube2iF/F SUMO1_CRE vs 3 × Ube2iF/F SUMO1_GFP vs 3 × Ube2iF/F Etv1_CRE vs 3 × Ube2iF/F Etv1_GFPGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Sumoylated Etv1 establishes mouse mammary cancer stem cells that support tumorigenesis by non-stem cancer cellsDevelopmental cell · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE242484_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1013569 and SRA study SRP458869. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
How we read this: 4 replicated groups read from 12 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7764483 Ube2iF/F SUMO1_CRE_Replicate 1 Ube2iF/F SUMO1_CRE
- GSM7764484 Ube2iF/F SUMO1_CRE_Replicate 2 Ube2iF/F SUMO1_CRE
- GSM7764485 Ube2iF/F SUMO1_CRE_Replicate 3 Ube2iF/F SUMO1_CRE
- GSM7764486 Ube2iF/F SUMO1_GFP_Replicate 1 Ube2iF/F SUMO1_GFP
- GSM7764487 Ube2iF/F SUMO1_GFP_Replicate 2 Ube2iF/F SUMO1_GFP
- GSM7764488 Ube2iF/F SUMO1_GFP_Replicate 3 Ube2iF/F SUMO1_GFP
- GSM7764489 Ube2iF/F Etv1_CRE_Replicate 1 Ube2iF/F Etv1_CRE
- GSM7764490 Ube2iF/F Etv1_CRE_Replicate 2 Ube2iF/F Etv1_CRE
- GSM7764491 Ube2iF/F Etv1_CRE_Replicate 3 Ube2iF/F Etv1_CRE
- GSM7764492 Ube2iF/F Etv1_GFP_Replicate 1 Ube2iF/F Etv1_GFP
- GSM7764493 Ube2iF/F Etv1_GFP_Replicate 2 Ube2iF/F Etv1_GFP
- GSM7764494 Ube2iF/F Etv1_GFP_Replicate 3 Ube2iF/F Etv1_GFP
- GSE272057 SUMOylated Etv1 establishes tumor-initiating cells during mammary oncogenesis [CUT&RUN] 2 samples shares etv1, tumor-initiating, establishes, oncogenesis, sumoylated, mammary
- GSE242487 SUMOylated Etv1 establishes tumor-initiating cells during mammary oncogenesis 39 samples shares etv1, tumor-initiating, establishes, oncogenesis, sumoylated, mammary
- GSE242485 SUMOylated Etv1 establishes tumor-initiating cells during mammary oncogenesis [RNA-seq] 18 samples shares etv1, tumor-initiating, establishes, oncogenesis, sumoylated, mammary
- GSE242486 SUMOylated Etv1 establishes tumor-initiating cells during mammary oncogenesis [scRNA-seq] 7 samples shares etv1, tumor-initiating, establishes, oncogenesis, sumoylated, mammary
- GSE254377 Ldb1 establishes multi-enhancer networks to regulate gene expression [ChIP-Seq] 65 samples shares establishes, chip-seq
- GSE272549 EOMES establishes mesoderm and endoderm differentiation potential through SWI/SNF-mediated global enhancer remodeling [ChIP-Seq] 40 samples shares establishes, chip-seq
- GSE322182 ETV1 activates a rapid conduction transcriptional program in rodent and human cardiomyocytes [RNA-Seq] 10 samples shares etv1
- GSE247349 scRNA-seq of control and Etv1 mutant distal small intestinal organoid cultures 2 samples shares etv1
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.