SUMOylated Etv1 establishes tumor-initiating cells during mammary oncogenesis [RNA-seq]
RNA-seq (gene expression) · mouse · 18 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 18 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Sumoylated Etv1 establishes mouse mammary cancer stem cells that support tumorigenesis by non-stem cancer cellsDevelopmental cell · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE242485_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1013570 and SRA study SRP458872. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 18 more — browse all 18 samples with per-sample file links →
- GSE242486 SUMOylated Etv1 establishes tumor-initiating cells during mammary oncogenesis [scRNA-seq] 7 samples shares etv1, tumor-initiating, establishes, oncogenesis, sumoylated, mammary, rna-seq
- GSE242487 SUMOylated Etv1 establishes tumor-initiating cells during mammary oncogenesis 39 samples shares etv1, tumor-initiating, establishes, oncogenesis, sumoylated, mammary
- GSE242484 SUMOylated Etv1 establishes tumor-initiating cells during mammary oncogenesis [ChIP-seq] 12 samples shares etv1, tumor-initiating, establishes, oncogenesis, sumoylated, mammary
- GSE272057 SUMOylated Etv1 establishes tumor-initiating cells during mammary oncogenesis [CUT&RUN] 2 samples shares etv1, tumor-initiating, establishes, oncogenesis, sumoylated, mammary
- GSE322182 ETV1 activates a rapid conduction transcriptional program in rodent and human cardiomyocytes [RNA-Seq] 10 samples shares etv1, rna-seq
- GSE247349 scRNA-seq of control and Etv1 mutant distal small intestinal organoid cultures 2 samples shares etv1, rna-seq
- GSE272547 EOMES establishes mesoderm and endoderm differentiation potential through SWI/SNF-mediated global enhancer remodeling [RNA-Seq] 49 samples shares establishes, rna-seq
- GSE273306 Chromatin remodeler CHD4 establishes chromatin states required for ovarian reserve formation, maintenance, and germ cell survival [RNA-seq] 20 samples shares establishes, rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.