T cell dysfunction in ARDS based on miRNA and mRNA integration analysis
Non-coding RNA profiling · human · 98 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Homo sapiens (human)
- Samples
- 98 samples: 34 × A vs 15 × HGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE243068_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA1016313 and SRA study SRP460205. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 49 samples.
How we read this: 2 replicated groups read from 98 sample titles; they account for 49 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7778543 A1 A
- GSM7778544 A6 A
- GSM7778545 A27 A
- GSM7778546 A33 A
- GSM7778547 A38 A
- GSM7778548 A41 A
- GSM7778549 A43 A
- GSM7778550 A45 A
- GSM7778551 A53 A
- GSM7778552 A57 A
- GSM7778553 A59 A
- GSM7778554 A65 A
- GSM7778555 A68 A
- GSM7778556 A70 A
- GSM7778557 A72 A
- GSM7778558 A73 A
- GSM7778559 A75 A
- GSM7778560 A81 A
- GSM7778561 A86 A
- GSM7778562 A87 A
- GSM7778563 A90 A
- GSM7778564 A97 A
- GSM7778565 A102 A
- GSM7778566 A108 A
- GSM7778567 A112 A
- GSM7778568 A2 A
- GSM7778569 A4 A
- GSM7778570 A7 A
- GSM7778571 A8 A
- GSM7778572 A9 A
- GSM7778573 A10 A
- GSM7778574 A13 A
- GSM7778575 A16 A
- GSM7778576 A28 A
- GSM7778577 H1 H
- GSM7778578 H2 H
- GSM7778579 H7 H
- GSM7778580 H8 H
- GSM7778581 H9 H
- GSM7778582 H11 H
+ 58 more — browse all 98 samples with per-sample file links →
- GSE246206 miRNA and mRNA Signatures in Human Acute Kidney Injury Tissue 112 samples shares mirna, mrna
- GSE243406 Unravelling the etiology of dilated cardiomyopathy through differential miRNA-mRNA interactome 15 samples shares mirna, mrna
- GSE304550 ALS-Associated TDP-43 Dysfunction Compromises UPF1-Dependent mRNA Metabolism Pathways Including Alternative Polyadenylation and 3’UTR Length 16 samples shares dysfunction, mrna
- GSE272333 TOWARDS THE GENERATION OF A LASER CAPTURE MICRODISSECTION-BASED HUMAN ANAGEN HAIR FOLLICLE TRANSCRIPTOME ATLAS 110 samples shares ards
- GSE336577 Integrated Transcriptomic and Immune Analysis Reveals Distinct Mitochondrial and Immune Signature in COVID-19 ARDS Requiring Invasive Mechanical Ventilation 94 samples shares ards
- GSE326415 Paired Transcriptomic Profiling of Airspace and Peripheral Blood Mononuclear Cells in Severe ARDS 63 samples shares ards
- GSE287613 p53 safeguards chemical reprogramming of human somatic cells towards pluripotency. 63 samples shares ards
- GSE270787 ZIC2 and ZIC3 promote SWI/SNF recruitment to safeguard progression towards human primed pluripotency 205 samples shares ards
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.