Unravelling the etiology of dilated cardiomyopathy through differential miRNA-mRNA interactome
Non-coding RNA profiling · human · 15 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Homo sapiens (human)
- Samples
- 15 samples: 15 × 21sGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Unraveling the Etiology of Dilated Cardiomyopathy through Differential miRNA-mRNA InteractomeBiomolecules · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE243406_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA1018441 and SRA study SRP461364. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 15 samples.
How we read this: 1 replicated groups read from 15 sample titles; they account for 15 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7785095 21s004499 21s
- GSM7785096 21s004500 21s
- GSM7785097 21s004501 21s
- GSM7785098 21s004502 21s
- GSM7785099 21s004503 21s
- GSM7785100 21s004504 21s
- GSM7785101 21s004505 21s
- GSM7785102 21s004506 21s
- GSM7785103 21s004525 21s
- GSM7785104 21s004526 21s
- GSM7785105 21s004528 21s
- GSM7785106 21s004529 21s
- GSM7785107 21s004530 21s
- GSM7785108 21s004531 21s
- GSM7785109 21s004532 21s
- GSE246299 Cardiac Fibrosis in Dilated Cardiomyopathy: Transcriptomics Insights, Histological Correlations, and Organoid Model Verifications 67 samples shares cardiomyopathy, dilated
- GSE245825 Cardiac Fibrosis in Dilated Cardiomyopathy: Transcriptomics Insights, Histological Correlations, and Organoid Model Verifications [RNA-seq I] 58 samples shares cardiomyopathy, dilated
- GSE302553 Pathogenetic mechanisms of muscle-specific ribosomes in dilated cardiomyopathy (AC16 RNA-seq) 42 samples shares cardiomyopathy, dilated
- GSE278521 Cytotoxic T-cells drive out come in Inflammatory Dilated Cardiomyopathy 37 samples shares cardiomyopathy, dilated
- GSE331527 Engineered heart tissues facilitate functional characterization of noncoding variants implicated in Hypertrophic and Dilated Cardiomyopathy [Bulk RNA-Seq] 15 samples shares cardiomyopathy, dilated
- GSE269705 LMNA-Related Dilated Cardiomyopathy: Single-Cell Transcriptomics during Patient-Derived iPSC Differentiation Support Cell Type and Lineage-Specific Dysregulation of Gene Expression and Development for Cardiomyocytes and Epicardium-Derived Cells 12 samples shares cardiomyopathy, dilated
- GSE315586 Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis 414 samples shares differential
- GSE290313 Differentially expressed transcripts associated with depressive symptoms during pregnancy and postpartum 301 samples shares differential
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.