Argonaute3-SF3B3 complex controls pre-mRNA splicing to restrain Type-2 immunity
Non-coding RNA profiling · mouse · 128 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Mus musculus (mouse)
- Samples
- 128 samples: 17 conditions, mostly with about 11 replicates eachGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Argonaute3-SF3B3 complex controls pre-mRNA splicing to restrain type 2 immunityCell reports · 2023
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE243918_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA1020566 and SRA study SRP462472. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 113 samples.
How we read this: 17 replicated groups read from 128 sample titles; they account for 113 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7794475 WT TH2 7d 001 WT TH2 7d
- GSM7794476 WT TH2 7d 002 WT TH2 7d
- GSM7794477 WT TH2 7d 003 WT TH2 7d
- GSM7794478 WT TH2 7d 004 WT TH2 7d
- GSM7794479 Ago134 TH2 7d 001 Ago134 TH2 7d
- GSM7794480 Ago134 TH2 7d 002 Ago134 TH2 7d
- GSM7794481 Ago134 TH2 7d 003 Ago134 TH2 7d
- GSM7794482 Ago134 TH2 7d 004 Ago134 TH2 7d
- GSM7794483 WT TH2 14d 001 WT TH2 14d
- GSM7794484 WT TH2 14d 002 WT TH2 14d
- GSM7794485 WT TH2 14d 003 WT TH2 14d
- GSM7794486 Ago134 TH2 14d 001 Ago134 TH2 14d
- GSM7794487 Ago134 TH2 14d 002 Ago134 TH2 14d
- GSM7794488 Ago134 TH2 14d 003 Ago134 TH2 14d
- GSM7798302 nT_WT_sorted_001 nT_WT_sorted
- GSM7798303 nT_WT_sorted_002 nT_WT_sorted
- GSM7798304 nT_WT_sorted_003 nT_WT_sorted
- GSM7798305 nT_WT_sorted_004 nT_WT_sorted
- GSM7798306 nT_A134_sorted_001 nT_A134_sorted
- GSM7798307 nT_A134_sorted_002 nT_A134_sorted
- GSM7798308 nT_A134_sorted_003 nT_A134_sorted
- GSM7798309 nT_A134_sorted_004 nT_A134_sorted
- GSM7798310 TH2-7d_WT_001 TH2-7d_WT
- GSM7798311 TH2-7d_WT_002 TH2-7d_WT
- GSM7798312 TH2-7d_WT_003 TH2-7d_WT
- GSM7798313 TH2-7d_WT_004 TH2-7d_WT
- GSM7798314 TH2-7d_A134_001 TH2-7d_A134
- GSM7798315 TH2-7d_A134_002 TH2-7d_A134
- GSM7798316 TH2-7d_A134_003 TH2-7d_A134
- GSM7798317 TH2-7d_A134_004 TH2-7d_A134
- GSM7798318 TH2-14d_WT_001 TH2-14d_WT
- GSM7798319 TH2-14d_WT_002 TH2-14d_WT
- GSM7798320 TH2-14d_WT_003 TH2-14d_WT
- GSM7798321 TH2-14d_A134_002 TH2-14d_A134
- GSM7798322 TH2-14d_A134_003 TH2-14d_A134
- GSM7798323 TH2-14d_A134_004 TH2-14d_A134
- GSM7798324 nT Cre A
- GSM7798325 nT Cre B
- GSM7798326 nT Cre C
- GSM7798327 nT Cre;A2 D
+ 88 more — browse all 128 samples with per-sample file links →
- GSE244066 Argonaute3-SF3B3 complex controls pre-mRNA splicing to restrain Type-2 immunity [RNA-seq: dissected tissues] 78 samples shares type-2, argonaute3-sf3b3, controls, pre-mrna, splicing, restrain, immunity, complex
- GSE243700 Argonaute3-SF3B3 complex controls pre-mRNA splicing to restrain Type-2 immunity [RNA-seq: cultured cells] 14 samples shares type-2, argonaute3-sf3b3, controls, pre-mrna, splicing, restrain, immunity, complex
- GSE242147 CRISPR-Cas screen in ILC2 identifies Mef2d as a regulator of GATA3 and type-2 immunity 36 samples shares type-2, immunity
- GSE242030 CRISPR-Cas screen in ILC2 identifies Mef2d as a regulator of GATA3 and type-2 immunity [ChIP-Seq] 17 samples shares type-2, immunity
- GSE205438 RNA splicing controls organ-wide maturation of postnatal heart in mice 88 samples shares controls, splicing
- GSE27218 Disrupted processing of long pre-mRNAs and widespread RNA missplicing are components of neuronal vulnerability from loss of nuclear TDP-43 (RNA-seq) 21 samples shares pre-mrna, splicing
- GSE246296 The KMT2 complex protein ASH2L controls meiosis through silencing transposon 20 samples shares controls, complex
- GSE308755 A neuroepithelial rheostat controls enteric type 1 and type 2 immunity [scRNA-seq] 12 samples shares controls, immunity
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.