Generation of Human Expandable Progenitors with Limb-Bud Features via Chemically Induced Dedifferentiation
RNA-seq (gene expression) · human · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 12 samples: 12 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Generation of human expandable limb-bud-like progenitors via chemically induced dedifferentiationCell stem cell · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE243931_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1020587 and SRA study SRP462915. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 12 sample titles: 12 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7798496 hCiLB-1013,scRNA-seq
- GSM7798497 hCiLB-0721,scRNA-seq
- GSM7798498 hASFs-0721,scRNA-seq
- GSM7798499 hADSCs-1013,scRNA-seq
- GSM7798500 hADSC-1013,RNA-seq
- GSM7798501 hASF-0721,RNA-seq
- GSM7798502 hCiLB-0721,RNA-seq
- GSM7798503 hADSC-0325,RNA-seq
- GSM7798504 hADSC-0618,RNA-seq
- GSM7798505 hCiLB-0325,RNA-seq
- GSM7798506 hCiLB-0618,RNA-seq
- GSM7798507 hCiLB-1013,RNA-seq
- GSE267656 Efficient generation of human retinal pigment epithelium cells via chemically induced pluripotency 39 samples shares generation, chemically, induced
- GSE196578 BulkRNA Sequencing of human induced pluripotent stem cells derived cardiac progenitors (hiPSC-CPs) from healthy control, tetralogy of Fallot (TOF) patients with DiGeorge Syndrome (DG) and without DiGeorge Syndrome (ND) 16 samples shares progenitors, induced
- GSE324673 Feeder-Free Generation of Lymphatic Endothelial Cells from Human Induced Pluripotent Stem Cells 15 samples shares generation, induced
- GSE239550 Generation of hESC-derived expandable hepatoblast organoids and their derivatives of functional polarized hepatocyte organoids under 3D suspended culture conditions 15 samples shares generation, expandable
- GSE272333 TOWARDS THE GENERATION OF A LASER CAPTURE MICRODISSECTION-BASED HUMAN ANAGEN HAIR FOLLICLE TRANSCRIPTOME ATLAS 110 samples shares generation
- GSE255626 Next generation sequencing from primary glioblastoma patient tissues (Total RNA-seq) 109 samples shares generation
- GSE288966 Multi-omics analysis identifies progenitors of CD4-CTLs [bulk RNA-seq] 70 samples shares progenitors
- GSE305132 Single-Cell Multiomic Atlas of Human Cortical Development in Down Syndrome - Neural Progenitors in vitro - Treatment with Antisense Oligonucleotides for PKNOX1, BACH1 and GABPA (Bulk RNA-seq Dataset) 68 samples shares progenitors
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.