Profiling R loop in mouse and human hematopietic cells with low cell input using S9.6 antibody coupled cut&tag [cut&tag K562]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 30 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 30 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE246552_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1033621 and SRA study SRP469218. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 30 more — browse all 30 samples with per-sample file links →
- GSE99172 Single-cell chromatin accessibility data from K562 cells using scATAC-seq 288 samples shares k562
- GSE320979 DNase-seq from K562 (ENCSR160FPV) 134 samples shares k562
- GSE276857 CUT&Tag in K562, HCT116, RPE1 and Jurkat cells 39 samples shares k562
- GSE322895 DNase-seq from K562 (ENCSR335RHJ) 26 samples shares k562
- GSE261411 BPDCN MYB Fusions Regulate Cell Cycle Genes, Impair Differentiation and Induce Myeloid-Dendritic Cell Leukemia [K562CutRun] 20 samples shares k562
- GSE263012 Genomic positioning in LBR and Lamin A K562 knockout cells 38 samples shares k562
- GSE268825 RNASeq of DNMT3A mutant K562 32 samples shares k562
- GSE289222 RNASeq of K562 cell clones for DNMT3A-WT, DNMT3A-W305*, DNMT3A-R882H, DNMT3A-R882C 32 samples shares k562
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.