RNA-seq of aortic dissection animal model induced by co-administration of BAPN and Fasudil and control groups
RNA-seq (gene expression) · mouse · 13 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 13 samples: 11 distinct titles, 1 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE247088_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1036207 and SRA study SRP470366. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 13 sample titles: 11 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7883083 C1_1
- GSM7883084 C2_1
- GSM7883085 C3_1
- GSM7883086 C4_1
- GSM7883087 F1_1
- GSM7883088 F2_1
- GSM7883089 F3_1
- GSM7883090 B1_1
- GSM7883091 B1_2
- GSM7883092 B1_3
- GSM7883093 Fb1_1
- GSM7883094 Fb2_1
- GSM7883095 Fb3_1
- GSE295180 Dissection of the immune landscape in Psoriatic Arthritis patients [Mouse scRNA-seq] 52 samples shares dissection, rna-seq
- GSE329337 ATAD3A Limits Aortic Dissection via Mito-Lysosome Contacts and Lipoylation 24 samples shares dissection, aortic
- GSE303772 Ontogenically distinct alveolar macrophages mediate cigarette smoke-induced inflammation and damage [RNA-Seq] 24 samples shares rna-seq, induced
- GSE264278 TIme-cource single-cell RNA-seq analysis of bleomycin and LPS-induced lung injury and fibrosis 18 samples shares rna-seq, induced
- GSE326952 Semaglutide-induced Loss of Skeletal Muscle Mass is Blunted by Co-administration of Ketone Esters 13 samples shares co-administration, induced
- GSE277487 Single-nucleus RNA-seq of mouse cortex following CCI-induced traumatic brain injury across multiple time points 12 samples shares rna-seq, induced
- GSE306116 Caspase-3 Control of RNA Splicing and Mitochondrial Dynamics in Microglia during Parkinson’s Disease [RNA-Seq] 12 samples shares rna-seq, control
- GSE220675 Kidney Single-Cell Atlas Reveals Macrophage Heterogeneity in Progression and Regression of Cisplatin Induced AKI [scRNA-seq] 11 samples shares rna-seq, induced
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.