Regulation of transcriptional signal integration and memory by inflammation-induced chromosome conformation [ATAC-Seq]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 10 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 10 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE247938_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1040940 and SRA study SRP472266. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 10 more — browse all 10 samples with per-sample file links →
- GSE247939 Regulation of transcriptional signal integration and memory by inflammation-induced chromosome conformation [ChIP-Seq] 36 samples shares inflammation-induced, conformation, integration, chromosome, signal, memory
- GSE247946 Regulation of transcriptional signal integration and memory by inflammation-induced chromosome conformation 132 samples shares inflammation-induced, conformation, integration, chromosome, signal, memory
- GSE308414 Step-wise epigenetic signal integration governs adaptive programming of cytotoxic lymphocytes [ATAC-seq AP1inhibitor] 16 samples shares integration, atac-seq, signal
- GSE281414 Base pair resolution chromosome conformation capture reveals mechanistic insights into the nature of chromatin structure [ATAC-Seq] 12 samples shares conformation, chromosome, atac-seq
- GSE292377 Step-wise signal integration governs adaptive programming of lymphocytes [bulkRNA-seq and ATAC-seq] 41 samples shares integration, atac-seq, signal
- GSE309245 Step-wise signal integration governs adaptive programming of lymphocytes [bulkRNA-seq and ATAC-seq 6hr Stim] 16 samples shares integration, atac-seq, signal
- GSE307191 Base pair resolution chromosome conformation capture reveals mechanistic insights into the nature of chromatin structure [ChIP-seq] 20 samples shares conformation, chromosome
- GSE308415 Step-wise epigenetic signal integration governs adaptive programming of cytotoxic lymphocytes [CUT&RUN STAT1 STAT5 cJun] 18 samples shares integration, signal
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.