Tet1 and hydroxymethylcytosine in transcription and DNA methylation fidelity (ChIP/DIP-Seq data)

Direct links to NCBI, no account and no request form: the whole study as GSE24841_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 17 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA133431 and SRA study SRP004033. Searching any of these in the dataset finder brings you back here.

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+ 17 more — browse all 17 samples with per-sample file links →

• GSE242067 Genome access is transcription factor specific and defined by nucleosome position 131 samples
• GSE242201 DNA methylation shapes the Polycomb landscape during the exit from naive pluripotency 39 samples
• GSE279347 Ezh2 Delays Activation of Differentiation Genes During Normal Cerebellar Granule Neuron Development and in Medulloblastoma [ChIP-seq] 32 samples
• GSE339012 Mega-Enhancers Compartmentalize Transcriptionally Active Long Genes in the Brain [ChIP-Seq] 22 samples
• GSE180560 KDM2A and KDM2B cooperatively protect a subset of CpG Islands from DNA methylation 15 samples
• GSE255961 Global Chromatin Remodeling and Widespread Differential Methylation Changes Underlie Brown Adipose Dysfunction and Dysregulated Metabolism in Response to Chronic Air Pollution Exposure: A Key Role for Reciprocal Regulation by HDAC9 and KDN2b 12 samples
• GSE293709 Transcriptome analysis in the prefrontal cortex of different ASD mouse models treated with drug 1565 samples
• GSE294832 Modular neuroinflammatory network discovery from large-scale phenotypic screening in genetically heterogeneous mice [part10] 1000 samples

Search all mouse ChIP / ATAC / CUT&Tag datasets in GEO →