PUS10-induced tRNA fragmentation impacts retrotransposon-driven inflammation
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 51 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 51 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- PUS10-induced tRNA fragmentation impacts retrotransposon-driven inflammationCell reports · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE248959_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1046501 and SRA study SRP474929. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 51 more — browse all 51 samples with per-sample file links →
- GSE291043 PUS10-induced tRNA fragmentation impacts retrotransposon-driven inflammation [Polysome profiling] 18 samples shares retrotransposon-driven, pus10-induced, fragmentation, impacts, trna
- GSE248955 PUS10-induced tRNA fragmentation impacts retrotransposon-driven inflammation [RNA-seq] 8 samples shares retrotransposon-driven, pus10-induced, fragmentation, impacts, trna
- GSE291045 PUS10-induced tRNA fragmentation impacts retrotransposon-driven inflammation [RNA-seq PUS10KO tdR-5-GlyGCC] 6 samples shares retrotransposon-driven, pus10-induced, fragmentation, impacts, trna
- GSE291044 PUS10-induced tRNA fragmentation impacts retrotransposon-driven inflammation [CUT&RUN] 4 samples shares retrotransposon-driven, pus10-induced, fragmentation, impacts, trna
- GSE284168 Mammalian queuosine tRNA modification impacts codon usage preferences to enhance cell proliferation and MHC-II expression [BMDC_0v100Q_mRNA-seq] 6 samples shares impacts, trna
- GSE271720 PUS10 driven tRNA fragmentation mediates transposon induced inflamation [HSC RNA-seq] 4 samples shares fragmentation, trna
- GSE271146 Inflammation Impacts Androgen Receptor Signaling in Basal Prostate Stem Cells Through Interleukin 1 Receptor Antagonist 282 samples shares impacts
- GSE262679 High-protein diet alleviate cardiac damage, adipose tissue inflammation, and alterations in the gut microbiota induced by chronic sleep fragmentation 13 samples shares fragmentation
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.