ZNF292 genome-wide occupancy during cortical interneuron development
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 31 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 31 samples: 7 conditions, mostly with about 4 replicates eachGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Requirements for the neurodevelopmental disorder-associated gene ZNF292 in human cortical interneuron development and functionCell reports · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE249941_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1051156 and SRA study SRP477400. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 28 samples.
How we read this: 7 replicated groups read from 31 sample titles; they account for 28 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7967948 D15 KRAB IgG Sample 1 D15 KRAB IgG Sample
- GSM7967949 D15 KRAB IgG Sample 2 D15 KRAB IgG Sample
- GSM7967950 D15 KRAB IgG Sample 3 D15 KRAB IgG Sample
- GSM7967951 D15 KRAB IgG Sample 4 D15 KRAB IgG Sample
- GSM7967952 D15 KRAB ZNF292 Sample 1 D15 KRAB ZNF292 Sample
- GSM7967953 D15 KRAB ZNF292 Sample 2 D15 KRAB ZNF292 Sample
- GSM7967954 D15 KRAB ZNF292 Sample 3 D15 KRAB ZNF292 Sample
- GSM7967955 D15 KRAB ZNF292 Sample 4 D15 KRAB ZNF292 Sample
- GSM7967956 D15 ZNF-G1 ZNF292 Sample 1 D15 ZNF-G1 ZNF292 Sample
- GSM7967957 D15 ZNF-G1 ZNF292 Sample 2 D15 ZNF-G1 ZNF292 Sample
- GSM7967958 D15 ZNF-G1 ZNF292 Sample 3 D15 ZNF-G1 ZNF292 Sample
- GSM7967959 D15 ZNF-G1 ZNF292 Sample 4 D15 ZNF-G1 ZNF292 Sample
- GSM7967960 D15 ZNF-G2 ZNF292 Sample 1 D15 ZNF-G2 ZNF292 Sample
- GSM7967961 D15 ZNF-G2 ZNF292 Sample 2 D15 ZNF-G2 ZNF292 Sample
- GSM7967962 D15 ZNF-G2 ZNF292 Sample 3 D15 ZNF-G2 ZNF292 Sample
- GSM7967963 D15 ZNF-G2 ZNF292 Sample 4 D15 ZNF-G2 ZNF292 Sample
- GSM7967964 D30 KRAB IgG Sample 1
- GSM7967965 D30 KRAB ZNF292 Sample 1 D30 KRAB ZNF292 Sample
- GSM7967966 D30 KRAB ZNF292 Sample 2 D30 KRAB ZNF292 Sample
- GSM7967967 D30 KRAB ZNF292 Sample 3 D30 KRAB ZNF292 Sample
- GSM7967968 D30 KRAB ZNF292 Sample 4 D30 KRAB ZNF292 Sample
- GSM7967969 D30 ZNF-G1 IgG Sample 1
- GSM7967970 D30 ZNF-G1 ZNF292 Sample 1 D30 ZNF-G1 ZNF292 Sample
- GSM7967971 D30 ZNF-G1 ZNF292 Sample 2 D30 ZNF-G1 ZNF292 Sample
- GSM7967972 D30 ZNF-G1 ZNF292 Sample 3 D30 ZNF-G1 ZNF292 Sample
- GSM7967973 D30 ZNF-G1 ZNF292 Sample 4 D30 ZNF-G1 ZNF292 Sample
- GSM7967974 D30 ZNF-G2 IgG Sample 1
- GSM7967975 D30 ZNF-G2 ZNF292 Sample 1 D30 ZNF-G2 ZNF292 Sample
- GSM7967976 D30 ZNF-G2 ZNF292 Sample 2 D30 ZNF-G2 ZNF292 Sample
- GSM7967977 D30 ZNF-G2 ZNF292 Sample 3 D30 ZNF-G2 ZNF292 Sample
- GSM7967978 D30 ZNF-G2 ZNF292 Sample 4 D30 ZNF-G2 ZNF292 Sample
- GSE249942 Requirements for the neurodevelopmental disorder-associated gene ZNF292 in human cortical interneuron development and function 55 samples shares znf292, interneuron, cortical
- GSE239400 Assessment of chromatin state changes during human cortical interneuron development 91 samples shares interneuron, cortical
- GSE239481 Defining Cis-regulatory Elements and Transcription Factors that Control Human Cortical Interneuron Development 118 samples shares interneuron, cortical
- GSE250482 Forebrain assembloids support the development of fast-spiking human PVALB+ cortical interneurons and uncover schizophrenia-associated defects. 10 samples shares interneuron, cortical
- GSE244189 Transcriptomic analysis of ASD and IDD associated pathogenic MYT1L S707Q mutation in human cortical interneurons 24 samples shares interneuron, cortical
- GSE186311 Genome-wide changes in RNAPII occupancy, RNAPII phosphorylation, and transcription in response to CDK12/13 inhibition in gliomas 20 samples shares genome-wide, occupancy
- GSE339365 Genome-wide H3K4me3 profiling of circulating immune cells reveals dynamic epigenetic reprogramming during acute critical COVID-19 120 samples shares genome-wide
- GSE142751 Genome-wide maps of chromatin state in 142 cancer cell lines [cell line] 855 samples shares genome-wide
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.