RNA-seq of three groups mice in hippocampus.
RNA-seq (gene expression) · mouse · 23 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 23 samples: 9 × hippocampus, Ctrl, vs 7 × hippocampus, EtOH, vs 7 × hippocampus, EtOH+UA,Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Gut Microbiota-Derived Anandamide Mediates the Therapeutic Effects of Urolithin A on Alcohol-Induced Cognitive and Social Dysfunction via CB1R-DRD2-RAP1 Signaling AxisAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE252138_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1057864 and SRA study SRP480333. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 23 samples.
How we read this: 3 replicated groups read from 23 sample titles; they account for 23 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7995018 hippocampus, Ctrl, rep1 hippocampus, Ctrl,
- GSM7995019 hippocampus, Ctrl, rep2 hippocampus, Ctrl,
- GSM7995020 hippocampus, Ctrl, rep3 hippocampus, Ctrl,
- GSM7995021 hippocampus, Ctrl, rep4 hippocampus, Ctrl,
- GSM7995022 hippocampus, Ctrl, rep5 hippocampus, Ctrl,
- GSM7995023 hippocampus, Ctrl, rep6 hippocampus, Ctrl,
- GSM7995024 hippocampus, Ctrl, rep7 hippocampus, Ctrl,
- GSM7995025 hippocampus, Ctrl, rep8 hippocampus, Ctrl,
- GSM7995026 hippocampus, Ctrl, rep9 hippocampus, Ctrl,
- GSM7995027 hippocampus, EtOH, rep1 hippocampus, EtOH,
- GSM7995028 hippocampus, EtOH, rep2 hippocampus, EtOH,
- GSM7995029 hippocampus, EtOH, rep3 hippocampus, EtOH,
- GSM7995030 hippocampus, EtOH, rep4 hippocampus, EtOH,
- GSM7995031 hippocampus, EtOH, rep5 hippocampus, EtOH,
- GSM7995032 hippocampus, EtOH, rep6 hippocampus, EtOH,
- GSM7995033 hippocampus, EtOH, rep7 hippocampus, EtOH,
- GSM7995034 hippocampus, EtOH+UA, rep1 hippocampus, EtOH+UA,
- GSM7995035 hippocampus, EtOH+UA, rep2 hippocampus, EtOH+UA,
- GSM7995036 hippocampus, EtOH+UA, rep3 hippocampus, EtOH+UA,
- GSM7995037 hippocampus, EtOH+UA, rep4 hippocampus, EtOH+UA,
- GSM7995038 hippocampus, EtOH+UA, rep5 hippocampus, EtOH+UA,
- GSM7995039 hippocampus, EtOH+UA, rep6 hippocampus, EtOH+UA,
- GSM7995040 hippocampus, EtOH+UA, rep7 hippocampus, EtOH+UA,
- GSE319614 Bulk RNA-seq transcriptome profiling of hippocampus across 17 autism spectrum disorder mouse models 269 samples shares hippocampus, rna-seq
- GSE264105 Plate-based scRNA-seq of plasma-positive microglia and plasma-negative microglia in young mice 1111 samples shares rna-seq
- GSE277789 Spatiotemporal and genetic cell lineage tracing of endodermal organogenesis at single-cell resolution [Smart-seq3-RNA-seq-add] 830 samples shares rna-seq
- GSE326100 scRNA-seq of mouse cochlea organoid cells 768 samples shares rna-seq
- GSE311449 Single cell RNA-seq of mouse brain vascular cells with Smart-seq2 method 391 samples shares rna-seq
- GSE228960 Bulk RNA-Seq from kidneys of uninephrectomized db/db mice as a model of severe diabetic kidney disease 28 samples shares rna-seq
- GSE326452 Bulk RNA-seq of mouse brain following closed head injury: role of IL-1R1 signaling 200 samples shares rna-seq
- GSE330674 Glucocorticoid resistance during chronic social stress in mice: RNA-seq of prefrontal cortex 24 samples shares rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.