Transcriptomic profiling of MC38 tumor cells on murine MC38 liver metastasis sections by NanoString GeoMX DSP
Spatial transcriptomics · mouse · 27 samples
- What it is
- Spatial transcriptomicsGene activity measured with its position in a tissue section.
- Organism
- Mus musculus (mouse)
- Samples
- 27 samples: 27 × Kang4_002 |Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- CMTM6 mediates the Warburg effect and promotes the liver metastasis of colorectal cancerExperimental & molecular medicine · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE253937_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Spatial studies usually ship Space Ranger style folders (count matrix plus tissue images). Look for them among the supplementary files.
Also filed as BioProject PRJNA1067713 and SRA study SRP485304. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 27 samples.
How we read this: 1 replicated groups read from 27 sample titles; they account for 27 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8030602 Kang4_002 | 001 Kang4_002 |
- GSM8030603 Kang4_002 | 002 Kang4_002 |
- GSM8030604 Kang4_002 | 003 Kang4_002 |
- GSM8030605 Kang4_002 | 004 Kang4_002 |
- GSM8030606 Kang4_002 | 005 Kang4_002 |
- GSM8030607 Kang4_002 | 006 Kang4_002 |
- GSM8030608 Kang4_002 | 007 Kang4_002 |
- GSM8030609 Kang4_002 | 008 Kang4_002 |
- GSM8030610 Kang4_002 | 009 Kang4_002 |
- GSM8030611 Kang4_002 | 010 Kang4_002 |
- GSM8030612 Kang4_002 | 011 Kang4_002 |
- GSM8030613 Kang4_002 | 013 Kang4_002 |
- GSM8030614 Kang4_002 | 014 Kang4_002 |
- GSM8030615 Kang4_002 | 015 Kang4_002 |
- GSM8030616 Kang4_002 | 016 Kang4_002 |
- GSM8030617 Kang4_002 | 017 Kang4_002 |
- GSM8030618 Kang4_002 | 018 Kang4_002 |
- GSM8030619 Kang4_002 | 019 Kang4_002 |
- GSM8030620 Kang4_002 | 020 Kang4_002 |
- GSM8030621 Kang4_002 | 021 Kang4_002 |
- GSM8030622 Kang4_002 | 022 Kang4_002 |
- GSM8030623 Kang4_002 | 023 Kang4_002 |
- GSM8030624 Kang4_002 | 024 Kang4_002 |
- GSM8030625 Kang4_002 | 025 Kang4_002 |
- GSM8030626 Kang4_002 | 026 Kang4_002 |
- GSM8030627 Kang4_002 | 027 Kang4_002 |
- GSM8030628 Kang4_002 | 028 Kang4_002 |
- GSE253938 Transcriptomic profiling of Adjacents CAFs of MC38 tumor cells on murine MC38 liver metastasis sections by NanoString GeoMX DSP 27 samples shares mc38, dsp, metastasis, nanostring, sections, liver, geomx
- GSE222708 Tumor-derived miR-9-5p-loaded EVs regulate cholesterol homeostasis to promote breast cancer liver metastasis in mice. 27 samples shares metastasis, liver
- GSE273610 In vivo armed macrophages curb liver metastasis through tumor reactive T cell rejuvenation (TAD18) 14 samples shares metastasis, liver
- GSE232359 Blocking tumor-intrinsic MNK1 kinase restricts metabolic adaptation and diminishes liver metastasis 11 samples shares metastasis, liver
- GSE324743 Hepatocytes promote liver metastasis of pancreatic cancer by providing exogenous serine 24 samples shares metastasis, liver
- GSE266900 Cxcr3 promotes protection from colorectal cancer liver metastasis by driving NK infiltration and plasticity 18 samples shares metastasis, liver
- GSE299638 Tyk2 controls immunosurveillance of colorectal cancer liver metastasis 18 samples shares metastasis, liver
- GSE324997 Hepatocytes promote liver metastasis of pancreatic cancer by providing exogenous serine, 2. 16 samples shares metastasis, liver
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.