Ex vivo imaging reveals the spatiotemporal control of ovulation
RNA-seq (gene expression) · mouse · 28 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 28 samples: 10 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE255274_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1074329 and SRA study SRP488754. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 28 samples.
How we read this: 10 replicated groups read from 28 sample titles; they account for 28 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8068050 In vivo setup, 0hr post-hCG administration, replicate 2 In vivo setup, 0hr post…
- GSM8068051 In vivo setup, 0hr post-hCG administration, replicate 3 In vivo setup, 0hr post…
- GSM8068052 In vitro setup, 0hr post-hCG administration, replicate 1 In vitro setup, 0hr pos…
- GSM8068053 In vitro setup, 0hr post-hCG administration, replicate 2 In vitro setup, 0hr pos…
- GSM8068054 In vitro setup, 0hr post-hCG administration, replicate 3 In vitro setup, 0hr pos…
- GSM8068055 In vivo setup, 3hr post-hCG administration, replicate 2 In vivo setup, 3hr post…
- GSM8068056 In vivo setup, 3hr post-hCG administration, replicate 3 In vivo setup, 3hr post…
- GSM8068057 In vitro setup, 3hr post-hCG administration, replicate 1 In vitro setup, 3hr pos…
- GSM8068058 In vitro setup, 3hr post-hCG administration, replicate 2 In vitro setup, 3hr pos…
- GSM8068059 In vitro setup, 3hr post-hCG administration, replicate 3 In vitro setup, 3hr pos…
- GSM8068060 In vivo setup, 6hr post-hCG administration, replicate 1 In vivo setup, 6hr post…
- GSM8068061 In vivo setup, 6hr post-hCG administration, replicate 2 In vivo setup, 6hr post…
- GSM8068062 In vivo setup, 6hr post-hCG administration, replicate 3 In vivo setup, 6hr post…
- GSM8068063 In vitro setup, 6hr post-hCG administration, replicate 1 In vitro setup, 6hr pos…
- GSM8068064 In vitro setup, 6hr post-hCG administration, replicate 2 In vitro setup, 6hr pos…
- GSM8068065 In vitro setup, 6hr post-hCG administration, replicate 3 In vitro setup, 6hr pos…
- GSM8068066 In vivo setup, 9hr post-hCG administration, replicate 1 In vivo setup, 9hr post…
- GSM8068067 In vivo setup, 9hr post-hCG administration, replicate 2 In vivo setup, 9hr post…
- GSM8068068 In vivo setup, 9hr post-hCG administration, replicate 3 In vivo setup, 9hr post…
- GSM8068069 In vitro setup, 9hr post-hCG administration, replicate 1 In vitro setup, 9hr pos…
- GSM8068070 In vitro setup, 9hr post-hCG administration, replicate 2 In vitro setup, 9hr pos…
- GSM8068071 In vitro setup, 9hr post-hCG administration, replicate 3 In vitro setup, 9hr pos…
- GSM8068072 In vivo setup, 12hr post-hCG administration, replicate 1 In vivo setup, 12hr pos…
- GSM8068073 In vivo setup, 12hr post-hCG administration, replicate 2 In vivo setup, 12hr pos…
- GSM8068074 In vivo setup, 12hr post-hCG administration, replicate 3 In vivo setup, 12hr pos…
- GSM8068075 In vitro setup, 12hr post-hCG administration, replicate 1 In vitro setup, 12hr po…
- GSM8068076 In vitro setup, 12hr post-hCG administration, replicate 2 In vitro setup, 12hr po…
- GSM8068077 In vitro setup, 12hr post-hCG administration, replicate 3 In vitro setup, 12hr po…
- GSE269191 ZEB2 is a Master Switch Controlling the Tumor-Associated Macrophage Program [in vivo] 145 samples shares control, vivo
- GSE327391 In vivo systematic detection of the outcomes of CRISPR/Cas9 mediated DNA repair in skeletal muscle stem cells [control] 81 samples shares control, vivo
- GSE277789 Spatiotemporal and genetic cell lineage tracing of endodermal organogenesis at single-cell resolution [Smart-seq3-RNA-seq-add] 830 samples shares spatiotemporal
- GSE341480 Spatiotemporal Clonal Architecture of the Newborn Mouse Forebrain 186 samples shares spatiotemporal
- GSE274992 Splenic fibroblasts control marginal zone B-cell movement and function via two distinct Notch2-dependent regulatory programs 119 samples shares control
- GSE305266 The cortical microenvironment drives early immune organization and controls early osteoclastogenesis in bone healing 90 samples shares control
- GSE311963 CD38 endows local antigen-specific Foxp3+ Treg cells with stress resilience for compartmentalized control of CNS inflammation 68 samples shares control
- GSE259317 Identification of novel embryonic differentiation stage by combined cell tracking and high dimensional protein imaging 57 samples shares imaging
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.