Partial beta cell loss induces transient compensatory proliferation I
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 3 × CTRL vs 3 × DT 1 DPA vs 3 × DT 3 DPA vs 3 × DT 5 DPAGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE256517_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1079817 and SRA study SRP491443. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
How we read this: 4 replicated groups read from 12 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8102129 CTRL rep1 CTRL
- GSM8102130 CTRL rep2 CTRL
- GSM8102131 CTRL rep3 CTRL
- GSM8102132 DT 1 DPA rep1 DT 1 DPA
- GSM8102133 DT 1 DPA rep2 DT 1 DPA
- GSM8102134 DT 1 DPA rep3 DT 1 DPA
- GSM8102135 DT 3 DPA rep1 DT 3 DPA
- GSM8102136 DT 3 DPA rep2 DT 3 DPA
- GSM8102137 DT 3 DPA rep3 DT 3 DPA
- GSM8102138 DT 5 DPA rep1 DT 5 DPA
- GSM8102139 DT 5 DPA rep2 DT 5 DPA
- GSM8102140 DT 5 DPA rep3 DT 5 DPA
- GSE256518 Partial beta cell loss induces transient compensatory proliferation II 34 samples shares proliferation, compensatory, transient, partial, induces, beta, loss
- GSE235779 Compensatory growth and recovery of tissue cytoarchitecture after transient cartilage-specific cell death in foetal mouse limbs 68 samples shares compensatory, transient
- GSE194200 Induction of transient and adaptive vs maladaptive unfolded protein responses of the endoplasmic reticulum in pancreatic beta cells 39 samples shares transient, beta
- GSE272215 Loss of aryl hydrocarbon receptor and long-term, but not short-term treatment with BAY2416964 alters gene expression profiles and reduces proliferation and migration of PyMT mammary cancer cells 16 samples shares proliferation, loss
- GSE288224 Transient Pharmacological Inhibition of SUMOylation during Pregnancy Induces Craniofacial Malformations in Offspring Mice 18 samples shares transient, induces
- GSE296365 Prenatal stress induces transient developmental alterations in distinct GABAergic populations and leads to long-lasting behavioral abnormalities 16 samples shares transient, induces
- GSE281151 Transient histone deacetylase inhibition induces cellular memory of gene expression and three-dimensional genome folding 259 samples shares transient, induces
- GSE296763 Mitochondrial respiration is necessary for CD8 T cell proliferation and cell fate 99 samples shares proliferation
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.