Mouse Vascularized Adipose Spheroids: An Organotypic Model for Thermogenic Adipocytes
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Mouse vascularized adipose spheroids: an organotypic model for thermogenic adipocytesFrontiers in endocrinology · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE261267_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1086355 and SRA study SRP494445. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 12 more — browse all 12 samples with per-sample file links →
- GSE291759 Transcriptome analysis in brown adipose tissue of mice lacking ATF4 in thermogenic adipocytes 4 samples shares thermogenic, adipocytes, adipose
- GSE273413 Adipose stem cells are sexually dimorphic cells with dual roles as preadipocytes and resident fibroblasts [FACS_pgWAT_iWAT_ASC] 143 samples shares adipocytes, adipose
- GSE333495 SETDB1 regulates gene expression in mouse brown adipose tissue and primary brown adipocytes 9 samples shares adipocytes, adipose
- GSE272408 Adipose stem cells are sexually dimorphic cells with dual roles as preadipocytes and resident fibroblasts [bulk_adipocytes] 62 samples shares adipocytes, adipose
- GSE273407 Adipose stem cells are sexually dimorphic cells with dual roles as preadipocytes and resident fibroblasts [FACS_castovary_ASC] 58 samples shares adipocytes, adipose
- GSE218943 Transcriptional profiling of mature murine adipocytes of the inguinal white adipose tissue depot following LPCAT3 deletion and dietary PUFA manipulation 30 samples shares adipocytes, adipose
- GSE273416 Adipose stem cells are sexually dimorphic cells with dual roles as preadipocytes and resident fibroblasts [in vitro_SVF] 29 samples shares adipocytes, adipose
- GSE232928 Transcriptional profiling of mature murine adipocytes of the inguinal white adipose tissue depot following LPCAT3 deletion and HFD-induced adipose hypertrophy. 24 samples shares adipocytes, adipose
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.