Transcriptional characterization of mouse and rat ventral pallidum using single nucleus RNA-sequencing
RNA-seq (gene expression) · rat · 8 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Rattus norvegicus (rat)
- Samples
- 8 samples: 2 × VP rat, vs 2 × NAC rat,Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Single-cell sequencing of rodent ventral pallidum reveals diverse neuronal subtypes with noncanonical interregional continuityScience advances · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE262729_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1093069 and SRA study SRP498475. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 4 samples.
How we read this: 2 replicated groups read from 8 sample titles; they account for 4 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8174620 VP mouse, high-fat diet, 2 weeks
- GSM8174621 VP mouse, control diet, 2 weeks
- GSM8174622 VP mouse, high-fat diet, 5 weeks
- GSM8174623 VP mouse, matched diet, 5 weeks
- GSM8174624 VP rat, batch 1 VP rat,
- GSM8174625 VP rat, batch 2 VP rat,
- GSM8174626 NAC rat, batch 1 NAC rat,
- GSM8174627 NAC rat, batch 2 NAC rat,
No close match found for this topic, so these are simply the most-viewed datasets of the same kind.
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- GSE310695 Systematic Benchmarking of CUT&Tag Improves the Reliability and Reproducibility of Chromatin Analysis [Cell number] 70 samples
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- GSE61991 Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity 35 samples
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- GSE269356 Gene Signature-guided Drug Screening Identified Narciclasine as a Potential Therapeutic Drug for Renal Interstitial Fibrosis 18 samples
- GSE253257 Neural zinc finger protein Myt1 drives oligodendrocyte differentiation via repressing HDAC1-mediated histone deacetylation 13 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.