Gene expression of HCT-116 cell lines treated with EVs isolated using GlyExo-Capture method
RNA-seq (gene expression) · human · 21 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 21 samples: 7 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE266634_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1108006 and SRA study SRP505798. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 21 samples.
How we read this: 7 replicated groups read from 21 sample titles; they account for 21 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8252854 HCC+ EVs treatment1 replicate1 HCC+ EVs treatment1
- GSM8252855 HCC+ EVs treatment1 replicate2 HCC+ EVs treatment1
- GSM8252856 HCC+ EVs treatment1 replicate3 HCC+ EVs treatment1
- GSM8252857 HCC+ EVs treatment2 replicate1 HCC+ EVs treatment2
- GSM8252858 HCC+ EVs treatment2 replicate2 HCC+ EVs treatment2
- GSM8252859 HCC+ EVs treatment2 replicate3 HCC+ EVs treatment2
- GSM8252860 HCC+ EVs treatment3 replicate1 HCC+ EVs treatment3
- GSM8252861 HCC+ EVs treatment3 replicate2 HCC+ EVs treatment3
- GSM8252862 HCC+ EVs treatment3 replicate3 HCC+ EVs treatment3
- GSM8252863 HCC- EVs treatment1 replicate1 HCC- EVs treatment1
- GSM8252864 HCC- EVs treatment1 replicate2 HCC- EVs treatment1
- GSM8252865 HCC- EVs treatment1 replicate3 HCC- EVs treatment1
- GSM8252866 HCC- EVs treatment2 replicate1 HCC- EVs treatment2
- GSM8252867 HCC- EVs treatment2 replicate2 HCC- EVs treatment2
- GSM8252868 HCC- EVs treatment2 replicate3 HCC- EVs treatment2
- GSM8252869 HCC- EVs treatment3 replicate1 HCC- EVs treatment3
- GSM8252870 HCC- EVs treatment3 replicate2 HCC- EVs treatment3
- GSM8252871 HCC- EVs treatment3 replicate3 HCC- EVs treatment3
- GSM8252872 Blank control replicate1 Blank control
- GSM8252873 Blank control replicate2 Blank control
- GSM8252874 Blank control replicate3 Blank control
- GSE283388 Gene Expression Profiling in Diffuse Large B-Cell Lymphoma (DLBCL) Cell Lines Treated with Selinexor 12 samples shares treated, lines
- GSE232322 Differential gene expression in breast cancer cell lines treated with a Baicalein at 100 uM concentration 12 samples shares treated, lines
- GSE130956 Investigation of ST8SIA1 expression in icaritin-treated and untreated melanoma cell lines 12 samples shares treated, lines
- GSE269374 Microprotein-Encoding RNA Regulation in Cells Treated with Pro-inflammatory and Pro-Fibrotic Stimuli (RNA-Seq colon cell lines) 54 samples shares treated, lines
- GSE280683 RNA-seq analysis of human multiple myeloma cell lines treated with pyridostatin and panobinostat 12 samples shares treated, lines
- GSE326946 Transcriptomic profiling of AML cell lines MV4-11 and Kasumi-1 treated with CK1α degrader PinA1 12 samples shares treated, lines
- GSE252382 ATACseq of TNBC cell lines treated with EZH2i (tazemetostat) and/or AKTi (ipatasertib) 84 samples shares treated, lines
- GSE232745 Small cell carcinoma of the ovary, hypercalcemic type (SCCOHT) cell lines treated with triptolide for 6 or 16h - H3K27ac CUT&RUN 56 samples shares treated, lines
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.