FUS-mediated inhibition of myogenesis by suppressing TNNT1 production [RNA-seq]
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 6 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- FUS-Mediated Inhibition of Myogenesis Elicited by Suppressing TNNT1 ProductionMolecular and cellular biology · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE267276_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1110970 and SRA study SRP507263. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
How we read this: 6 replicated groups read from 12 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8263396 Control siRNA D0 replicate 1 Control siRNA D0
- GSM8263397 Control siRNA D0 replicate 2 Control siRNA D0
- GSM8263398 FUS siRNA 3U D0 replicate 1 FUS siRNA 3U D0
- GSM8263399 FUS siRNA 3U D0 replicate 2 FUS siRNA 3U D0
- GSM8263400 Control siRNA D1 replicate 1 Control siRNA D1
- GSM8263401 Control siRNA D1 replicate 2 Control siRNA D1
- GSM8263402 FUS siRNA 3U D1 replicate 1 FUS siRNA 3U D1
- GSM8263403 FUS siRNA 3U D1 replicate 2 FUS siRNA 3U D1
- GSM8263404 Control siRNA D3 replicate 1 Control siRNA D3
- GSM8263405 Control siRNA D3 replicate 2 Control siRNA D3
- GSM8263406 FUS siRNA 3U D3 replicate 1 FUS siRNA 3U D3
- GSM8263407 FUS siRNA 3U D3 replicate 2 FUS siRNA 3U D3
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.