GEO series

Normalization of whole-genome SNP data from acute monocytic leukemia patients for exome sequencing

GSE27193 Homo sapiens Genome variation profiling by SNP array; SNP genotyping by SNP array 9 samples Submitted 2011/02/12 Platform GPL8887Platform GPL8888

Summary

With the whole genome SNPs array information, we could evaluate the sensitivity and specificity of the point mutation we conclude from the next-generation sequencing data. Furthermore, we could use the true positive mutation as our guidance to exclude the most unreliable single nucleotide variation detected from sequence. After the process, we could promise a very high specificity under minimum loss of sensitivity.

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Direct links to NCBI, no account and no request form: the whole study as GSE27193_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 9 samples.

Whole study · RAW.tar ↓ Series matrix ↓ All supplementary files ↗

Also filed as BioProject PRJNA142067. Searching any of these in the dataset finder brings you back here.

NCBI GEO page ↗ Paper (PMID 21399634) ↗

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