Noncoding RNA, ncRNA-a3, epigenetically regulates TAL1 transcriptional program during erythropoiesis (RNA-Seq)
RNA-seq (gene expression) · human · 13 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 13 samples: 12 distinct titles, 1 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Noncoding RNA, ncRNA-a3, Epigenetically Regulates TAL1 Transcriptional Program During ErythropoiesisMolecular and cellular biology · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE272341_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1136480 and SRA study SRP520237. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 13 sample titles: 12 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8398766 RNA_K562_WT1
- GSM8398767 RNA_K562_KD1
- GSM8398768 RNA_K562_KD2
- GSM8398769 RNA_CD34_D0
- GSM8398770 RNA_CD34_D3_WT
- GSM8398771 RNA_CD34_D3_KD
- GSM8398772 RNA_CD34_D3_Rescue
- GSM8398773 RNA_CD34_D7_WT
- GSM8398774 RNA_CD34_D7_KD
- GSM8398775 RNA_CD34_D7_Rescue
- GSM8398776 RNA_CD34_D14_WT
- GSM8398777 RNA_CD34_D14_KD
- GSM8398778 RNA_CD34_D14_Rescue
- GSE272339 Noncoding RNA, ncRNA-a3, epigenetically regulates TAL1 transcriptional program during erythropoiesis (CUT&Run) 15 samples shares ncrna-a3, tal1, epigenetically, erythropoiesis, noncoding, program
- GSE272338 Noncoding RNA, ncRNA-a3, epigenetically regulates TAL1 transcriptional program during erythropoiesis (ATAC-Seq) 3 samples shares ncrna-a3, tal1, epigenetically, erythropoiesis, noncoding, program
- GSE272340 Noncoding RNA, ncRNA-a3, epigenetically regulates TAL1 transcriptional program during erythropoiesis (NG Capture-C) 3 samples shares ncrna-a3, tal1, epigenetically, erythropoiesis, noncoding, program
- GSE305789 Activation of OSM-STAT3 Epigenetically Regulates Tumor-Promoting Transcriptional Programs in Cervical Cancer [RNA-Seq] 8 samples shares epigenetically, program, rna-seq
- GSE223141 Nuclear IDH1 regulates human erythropoiesis by eliciting chromatin state reprogramming [RNA-seq] 6 samples shares erythropoiesis, program, rna-seq
- GSE203231 ACK1/TNK2 Epigenetically Regulates Cell Cycle Program to Promote Breast Cancer Resistance to CDK4/6 inhibitor (RNA-Seq) 4 samples shares epigenetically, program, rna-seq
- GSE283796 BCL11A is required for normal erythropoiesis [RNA-seq_Sorted] 38 samples shares erythropoiesis, rna-seq
- GSE281733 CTCF is selectively required for maintaining chromatin accessibility and gene expression in human erythropoiesis [RNA-seq] 18 samples shares erythropoiesis, rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.