Molecular organization of autonomic, respiratory, and spinally-projecting neurons in the mouse ventrolateral medulla
Single-cell RNA-seq · mouse · 16 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart. Read from the summary: GEO's own type field only says 'expression profiling by sequencing', so confirm it in the paper.
- Organism
- Mus musculus (mouse)
- Samples
- 16 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Molecular Organization of Autonomic, Respiratory, and Spinally-Projecting Neurons in the Mouse Ventrolateral MedullaThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE272976_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1139741 and SRA study SRP522020. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 16 more — browse all 16 samples with per-sample file links →
- GSE271392 Transcriptomic profiling of medulla and cervical spinal cord to study respiratory neuropathology in Spinocerebellar ataxia type 7 35 samples shares respiratory, medulla
- GSE287551 Spatial organization, chromatin accessibility and gene-regulatory programs defining sensory neurons 10 samples shares organization, neurons
- GSE186180 Molecular, anatomical, and functional organization of lung interoceptors 136 samples shares organization
- GSE190762 Reversibility of long-term changes to pulmonary function post early life respiratory viral infection 144 samples shares respiratory
- GSE246589 Organization of Corticocortical and Thalamocortical Top-down Inputs in the Primary Visual Cortex 91 samples shares organization
- GSE305266 The cortical microenvironment drives early immune organization and controls early osteoclastogenesis in bone healing 90 samples shares organization
- GSE310753 Neuronal Activity Suppresses NEUROD-Dependent Transcription and Genome Organization [RNA-Seq] 73 samples shares organization
- GSE287837 Forced expression of MSR repeat transcripts above a threshold limit breaks heterochromatin organization 36 samples shares organization
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.