Reversibility of long-term changes to pulmonary function post early life respiratory viral infection
RNA-seq (gene expression) · mouse · 144 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 144 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE190762_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA788449 and SRA study SRP350502. Searching any of these in the dataset finder brings you back here.
The grouping that defines any comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Sample titles run LH001 … LH144 and carry no group information.
- GSM5731093 LH001
- GSM5731094 LH002
- GSM5731095 LH003
- GSM5731096 LH004
- GSM5731097 LH005
- GSM5731098 LH006
- GSM5731099 LH007
- GSM5731100 LH008
- GSM5731101 LH009
- GSM5731102 LH010
- GSM5731103 LH011
- GSM5731104 LH012
- GSM5731105 LH013
- GSM5731106 LH014
- GSM5731107 LH015
- GSM5731108 LH016
- GSM5731109 LH017
- GSM5731110 LH018
- GSM5731111 LH019
- GSM5731112 LH020
- GSM5731113 LH021
- GSM5731114 LH022
- GSM5731115 LH023
- GSM5731116 LH024
- GSM5731117 LH025
- GSM5731118 LH026
- GSM5731119 LH027
- GSM5731120 LH028
- GSM5731121 LH029
- GSM5731122 LH030
- GSM5731123 LH031
- GSM5731124 LH032
- GSM5731125 LH033
- GSM5731126 LH034
- GSM5731127 LH035
- GSM5731128 LH036
- GSM5731129 LH037
- GSM5731130 LH038
- GSM5731131 LH039
- GSM5731132 LH040
+ 104 more — browse all 144 samples with per-sample file links →
- GSE288245 Long-term post-ovariectomy mouse model recapitulates hypothalamic transcriptomic changes observed during the menopausal transition in women 33 samples shares long-term, changes, post
- GSE280388 Increased pulmonary blood flow leads to alveolar dysplasia at early postnatal developmental stage 10 samples shares pulmonary, early, post
- GSE264058 Post-resolution macrophage-derived lipids shapes long-term tissue immunity and integrity 40 samples shares long-term, post
- GSE289561 Long-term chronic exposure of mice to sodium fluoride and a mixture of endocrine disruptors lead to easily observable tooth enamel and retina abnormalities underlying changes in hepatic metabolism 24 samples shares long-term, changes
- GSE302271 Plasmacytoid dendritic cells are dispensable or detrimental in murine systemic or respiratory viral infections [RNA-Seq 2] 22 samples shares respiratory, viral
- GSE262420 Mechanomemory of pulmonary fibroblasts demonstrates reversibility of transcriptomics and contraction phenotypes 20 samples shares reversibility, pulmonary
- GSE302124 Plasmacytoid dendritic cells are dispensable or detrimental in murine systemic or respiratory viral infections [RNA-Seq 1] 18 samples shares respiratory, viral
- GSE269663 A long-term high fat diet induces differential gene expression changes in spatially distinct adipose tissues. 16 samples shares long-term, changes
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.