Human Lung Allografts Experience Persistent Fibrogenic Shift Following Acute Cellular Rejection
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 69 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 69 samples: 56 distinct titles, 2 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Human lung allografts experience persistent fibrogenic shift following acute cellular rejectionThe Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE274199_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1145391. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 69 sample titles: 56 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8444979 TBBx, A4, biopsy 01
- GSM8444980 TBBx, A3, biopsy 03
- GSM8444981 TBBx, A3, biopsy 04
- GSM8444982 TBBx, A0, biopsy 05
- GSM8444983 TBBx, A0, biopsy 06
- GSM8444984 TBBx, A0, biopsy 06, TCR
- GSM8444985 TBBx, A0, biopsy 06, BCR
- GSM8444986 TBBx, A0, biopsy 07
- GSM8444987 TBBx, A0, biopsy 07, TCR
- GSM8444988 TBBx, A0, biopsy 07, BCR
- GSM8444989 TBBx, A0, biopsy 08
- GSM8444990 TBBx, A0, biopsy 08, TCR
- GSM8444991 TBBx, A0, biopsy 08, BCR
- GSM8444992 TBBx, A0, biopsy 11
- GSM8444993 TBBx, A0, biopsy 11, TCR
- GSM8444994 TBBx, A0, biopsy 11, BCR
- GSM8444995 TBBx, A0, biopsy 09
- GSM8444996 TBBx, A0, biopsy 09, TCR
- GSM8444997 TBBx, A0, biopsy 09, BCR
- GSM8444998 TBBx, A0, biopsy 10
- GSM8444999 TBBx, A0, biopsy 10, TCR
- GSM8445000 TBBx, A0, biopsy 10, BCR
- GSM8445001 TBBx, A0, biopsy 18
- GSM8445002 TBBx, A0, biopsy 18, TCR
- GSM8445003 TBBx, A0, biopsy 18, BCR
- GSM8445004 TBBx, A0, biopsy 12
- GSM8445005 TBBx, A0, biopsy 12, TCR
- GSM8445006 TBBx, A0, biopsy 12, BCR
- GSM8445007 TBBx, A0, biopsy 13
- GSM8445008 TBBx, A0, biopsy 13, TCR
- GSM8445009 TBBx, A0, biopsy 13, BCR
- GSM8445010 TBBx, A2, biopsy 42
- GSM8445011 TBBx, A2, biopsy 42, TCR
- GSM8445012 TBBx, A2, biopsy 42, BCR
- GSM8445013 TBBx, A0, biopsy 45
- GSM8445014 TBBx, A0, biopsy 45, TCR
- GSM8445015 TBBx, A0, biopsy 45, BCR
- GSM8445016 TBBx, A0, biopsy 49
- GSM8445017 TBBx, A0, biopsy 49, TCR
- GSM8445018 TBBx, A0, biopsy 49, BCR
+ 29 more — browse all 69 samples with per-sample file links →
- GSE275343 Coordinated gene expression within persistent STAT3-associated chromatin conformations contributes to hepatocellular carcinoma progression [CHIP-seq] 42 samples shares persistent, cellular
- GSE266052 Cytokine Priming Enhances the Antifibrotic Effects of Mesenchymal Stromal Cells Conditioned Medium Via Fibrogenic Myofibroblasts Elimination and Extracellular Matrix Degradation. 20 samples shares fibrogenic, cellular
- GSE275342 Coordinated gene expression within persistent STAT3-associated chromatin conformations contributes to hepatocellular carcinoma progression [RNA-seq] 16 samples shares persistent, cellular
- GSE252776 Persistent organic pollutants dysregulate energy homeostasis in human ovaries in vitro 242 samples shares persistent
- GSE196619 Synthetic transcription factor overrides persistent repressive chromatin marks 120 samples shares persistent
- GSE196617 Synthetic transcription factor overrides persistent repressive chromatin marks [ChIP-seq] 108 samples shares persistent
- GSE243905 Single-cell TCR profiling of CSF and blood cells of PWH reveals persistent and shared infected T cell clones across tissue compartments even after ART 82 samples shares persistent
- GSE255985 Persistent epigenome anomalies in induced pluripotent stem cells from late-onset sporadic Alzheimer’s disease cases 58 samples shares persistent
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.