Tracking of donor and recipient immune and leukemia phenotypes after allogeneic stem cell transplantation using mitochondrial DNA mutations. [ASAP-Seq 4]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 22 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 22 samples: 22 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Tracking Rare Single Donor and Recipient Immune and Leukemia Cells after Allogeneic Hematopoietic Cell Transplantation Using Mitochondrial DNA MutationsBlood cancer discovery · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE275725_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1152791. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 22 sample titles: 22 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8483510 AML1007.1 scATAC-seq
- GSM8483511 AML1007.5 scATAC-seq
- GSM8483512 AML1007.6 scATAC-seq
- GSM8483513 AML1011.1 scATAC-seq
- GSM8483514 AML1011.2 scATAC-seq
- GSM8483515 AML1011.A scATAC-seq
- GSM8483516 AML1011.B scATAC-seq
- GSM8483517 AML1012.A scATAC-seq
- GSM8483518 AML1007.1 TSA
- GSM8483519 AML1007.5 TSA
- GSM8483520 AML1007.6 TSA
- GSM8483521 AML1011.1 TSA
- GSM8483522 AML1011.2 TSA
- GSM8483523 AML1011.A TSA
- GSM8483524 AML1011.B TSA
- GSM8483525 AML1012.A TSA
- GSM8483526 Multiplex experiment 1 - AML1010.5 and AML1012.1 - scDNA-seq
- GSM8483527 Multiplex experiment 1 - AML1010.5 and AML1012.1 - Total-seq D
- GSM8483528 Multiplex experiment 2 - AML1010.1 and AML1026.1 - scDNA-seq
- GSM8483529 Multiplex experiment 2 - AML1010.1 and AML1026.1 - Total-seq D
- GSM8483530 Multiplex experiment 3 - AML1012.4 and AML1026.3 - scDNA-seq
- GSM8483531 Multiplex experiment 3 - AML1012.4 and AML1026.3 - Total-seq D
- GSE234552 Tracking of donor and recipient immune and leukemia phenotypes after allogeneic stem cell transplantation using mitochondrial DNA mutations. [ASAP-Seq 2] 30 samples shares transplantation, mitochondrial, phenotypes, allogeneic, recipient, mutations, tracking, leukemia
- GSE234555 Tracking of donor and recipient immune and leukemia phenotypes after allogeneic stem cell transplantation using mitochondrial DNA mutations. [ASAP-Seq 3] 14 samples shares transplantation, mitochondrial, phenotypes, allogeneic, recipient, mutations, tracking, leukemia
- GSE234556 Tracking of donor and recipient immune and leukemia phenotypes after allogeneic stem cell transplantation using mitochondrial DNA mutations. [Tapestri] 10 samples shares transplantation, mitochondrial, phenotypes, allogeneic, recipient, mutations, tracking, leukemia
- GSE234551 Tracking of donor and recipient immune and leukemia phenotypes after allogeneic stem cell transplantation using mitochondrial DNA mutations. [ASAP-Seq 1] 9 samples shares transplantation, mitochondrial, phenotypes, allogeneic, recipient, mutations, tracking, leukemia
- GSE234558 Tracking rare single donor and recipient immune and leukemia cells after allogeneic hematopoietic cell transplantation using mitochondrial DNA mutations 85 samples shares transplantation, mitochondrial, allogeneic, recipient, mutations, tracking, leukemia
- GSE287297 Fusion oncoproteins and cooperating mutations define disease phenotypes in NUP98-rearranged leukemia [RNA-seq] 70 samples shares phenotypes, mutations, leukemia
- GSE317520 Mitochondrial DNA Mutations Drive Tumor Heterogeneity in Papillary Thyroid Carcinoma 92 samples shares mitochondrial, mutations
- GSE298158 Single dose of CD137-Antibody Drug Conjugate protects non-human primate allogeneic HCT recipients against acute GVHD 70 samples shares allogeneic, recipient
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.