Tachykinin signaling defines distinct populations of glia in the enteric nervous system [Bulk RNA-seq]
RNA-seq (gene expression) · mouse · 19 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 19 samples: 7 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Tachykinin signaling defines distinct populations of glia in the enteric nervous systemNeuron · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE275794_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1153003 and SRA study SRP528971. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 18 samples.
How we read this: 7 replicated groups read from 19 sample titles; they account for 18 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8484848 ileum muscle, male GFPneg, rep1 ileum muscle, male GFPn…
- GSM8484849 ileum muscle, male GFPpos, rep1 ileum muscle, male GFPp…
- GSM8484850 ileum mucosa, female GFPneg, rep1 ileum mucosa, female GF…
- GSM8484851 ileum muscle, female GFPneg, rep1
- GSM8484852 ileum mucosa, male GFPpos, rep1 ileum mucosa, male GFPp…
- GSM8484853 ileum mucosa, male GFPneg, rep1 ileum mucosa, male GFPn…
- GSM8484854 ileum muscle, male GFPpos, rep2 ileum muscle, male GFPp…
- GSM8484855 ileum muscle, male GFPneg, rep2 ileum muscle, male GFPn…
- GSM8484856 ileum mucosa, female GFPpos, rep1 ileum mucosa, female GF…
- GSM8484857 ileum mucosa, female GFPneg, rep2 ileum mucosa, female GF…
- GSM8484858 ileum mucosa, female GFPpos, rep2 ileum mucosa, female GF…
- GSM8484859 ileum mucosa, male GFPpos, rep2 ileum mucosa, male GFPp…
- GSM8484860 ileum mucosa, male GFPneg, rep2 ileum mucosa, male GFPn…
- GSM8484861 ileum muscle, male GFPpos, rep3 ileum muscle, male GFPp…
- GSM8484862 ileum mucosa, female GFPpos, rep3 ileum mucosa, female GF…
- GSM8484863 ileum muscle, female GFPpos, rep1 ileum muscle, female GF…
- GSM8484864 ileum mucosa, female GFPneg, rep3 ileum mucosa, female GF…
- GSM8484865 ileum mucosa, male GFPneg, rep3 ileum mucosa, male GFPn…
- GSM8484866 ileum muscle, female GFPpos, rep2 ileum muscle, female GF…
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.