An IL-33–LMO4 axis instructs type 2 myelopoiesis via GATA factor re-allocation (BMT LMO4 ATAC-Seq)
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 17 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 17 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE276825_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1159193 and SRA study SRP531852. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 17 more — browse all 17 samples with per-sample file links →
- GSE276829 An IL-33–LMO4 axis instructs type 2 myelopoiesis via GATA factor re-allocation (BMT LMO4 RNA-Seq) 18 samples shares il-33, lmo4, gata, bmt, re-allocation, myelopoiesis, instructs
- GSE276823 An IL-33–LMO4 axis instructs type 2 myelopoiesis via GATA factor re-allocation (G320D ATAC-Seq) 18 samples shares il-33, lmo4, gata, re-allocation, myelopoiesis, instructs, atac-seq
- GSE276826 An IL-33–LMO4 axis instructs type 2 myelopoiesis via GATA factor re-allocation (G320D RNA-Seq) 18 samples shares il-33, lmo4, gata, re-allocation, myelopoiesis, instructs
- GSE276827 An IL-33–LMO4 axis instructs type 2 myelopoiesis via GATA factor re-allocation (H. polygyrus RNA-Seq) 12 samples shares il-33, lmo4, gata, re-allocation, myelopoiesis, instructs
- GSE276828 An IL-33–LMO4 axis instructs type 2 myelopoiesis via GATA factor re-allocation (IL33 RNA-Seq) 6 samples shares il-33, lmo4, gata, re-allocation, myelopoiesis, instructs
- GSE230597 Bulk RNA-seq of ILC2, Tconv, Th2, Treg Gata3hi and Treg Gatalo from the lungs of IL-33 treated mice 22 samples shares il-33, gata
- GSE290751 Lineage Plasticity Driven by GATA6 Loss Fuels Colorectal Cancer Metastasis [ATAC-seq_met] 15 samples shares gata, atac-seq
- GSE218833 MrgprA3 neurons selectively control myeloid-derived IL-33 for IL-17 dependent cutaneous immunity [ATAC-Seq] 5 samples shares il-33, atac-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.