Projection-TAGs enable multiplex projection tracing and multi-modal profiling of projection neurons
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 20 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 20 samples: 20 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Projection-TAGs enable multiplex projection tracing and multi-modal profiling of projection neuronsbioRxiv : the preprint server for biology · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE277718_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1163431 and SRA study SRP533938. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 20 sample titles: 20 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8528422 Animal1, SSp, lib1, CYP, RNA
- GSM8528423 Animal2, SSp, lib1, Saline, RNA
- GSM8528424 Animal5, MOp, lib1, Saline, RNA
- GSM8528425 Animal5, SSp, lib1, Saline, RNA
- GSM8528426 Animal6, MOp, lib1, CYP, RNA
- GSM8528427 Animal6, MOp, lib2, CYP, RNA
- GSM8528428 Animal6, SSp, lib1, CYP, RNA
- GSM8528429 Animal6, SSp, lib2, CYP, RNA
- GSM8528430 Animal3, MOp, lib1, CYP, RNA
- GSM8528431 Animal3, SSp, lib1, CYP, RNA
- GSM8528432 Animal4, MOp, lib1, Saline, RNA
- GSM8528433 Animal4, SSp, lib1, Saline, RNA
- GSM8528434 Animal1, SSp, lib1, CYP, ATAC
- GSM8528435 Animal2, SSp, lib1, Saline, ATAC
- GSM8528436 Animal5, MOp, lib1, Saline, ATAC
- GSM8528437 Animal5, SSp, lib1, Saline, ATAC
- GSM8528438 Animal6, MOp, lib1, CYP, ATAC
- GSM8528439 Animal6, MOp, lib2, CYP, ATAC
- GSM8528440 Animal6, SSp, lib1, CYP, ATAC
- GSM8528441 Animal6, SSp, lib2, CYP, ATAC
- GSE283035 Satb2 gene dosage in cortical projection neurons impacts neuronal maturation and somatosensory processing 47 samples shares projection, neurons
- GSE221922 BDNF-TrkB signalling depletion from the indirect pathway spiny projection neurons (iSPN) leads to age-dependent spontaneous hyperlocomotion. 40 samples shares projection, neurons
- GSE283033 Satb2 gene dosage in cortical projection neurons impacts neuronal maturation and somatosensory processing [CUT&RUN] 39 samples shares projection, neurons
- GSE2039 FACS purified cortical projection neurons 19 samples shares projection, neurons
- GSE316516 Projection-defined amygdala neurons encode emotional memory through distinct transcriptomic programs 15 samples shares projection, neurons
- GSE276009 Comparative Single Cell Transcriptome Analysis of c-Met Receptor Expressing and Non-Expressing Projection Neurons in the Developing Frontal and Visual Cortices 12 samples shares projection, neurons
- GSE314177 Postnatal day 3 (P3) mouse cortical projection neurons: Ctrl versus Cdk7 KO 10 samples shares projection, neurons
- GSE283032 Satb2 gene dosage in cortical projection neurons impacts neuronal maturation and somatosensory processing [ChIP-seq] 8 samples shares projection, neurons
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.