Effects of dexamethasone and desisobutyryl ciclesonide on gene expression
Expression microarray · mouse · 40 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Mus musculus (mouse)
- Samples
- 40 samples: 8 conditions, mostly with about 4 replicates eachGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE277836_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA1164294 and SRA study SRP519410. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 28 samples.
How we read this: 8 replicated groups read from 40 sample titles; they account for 28 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8384906 Veh 1335 P6
- GSM8384907 Veh 1360 P2
- GSM8384908 Veh 1383 P6 Veh 1383 P
- GSM8384909 Veh 1383 P5 Veh 1383 P
- GSM8384910 Dex 1335 P3
- GSM8384911 Dex 1360 P4
- GSM8384912 Dex 1368 P1
- GSM8384913 Dex 1383 P2
- GSM8384914 Cil 1360 P1 Cil 1360 P
- GSM8384915 Cil 1360 P8 Cil 1360 P
- GSM8384916 Cil 1368 P4
- GSM8384917 Cil 1383 P7
- GSM8384918 Des 1335 P4
- GSM8384919 Des 1360 P5
- GSM8384920 Des 1368 P3
- GSM8384921 Des 1383 P4
- GSM8392478 Lung, Vehicle 1 Lung, Vehicle
- GSM8392479 Lung, Vehicle 2 Lung, Vehicle
- GSM8392480 Lung, Vehicle 3 Lung, Vehicle
- GSM8392481 Lung, Vehicle 4 Lung, Vehicle
- GSM8392482 Lung, dexamethasone 1 Lung, dexamethasone
- GSM8392483 Lung, dexamethasone 2 Lung, dexamethasone
- GSM8392484 Lung, dexamethasone 3 Lung, dexamethasone
- GSM8392485 Lung, dexamethasone 4 Lung, dexamethasone
- GSM8392486 Lung, desisobutyryl ciclesonide 1 Lung, desisobutyryl cic…
- GSM8392487 Lung, desisobutyryl ciclesonide 2 Lung, desisobutyryl cic…
- GSM8392488 Lung, desisobutyryl ciclesonide 3 Lung, desisobutyryl cic…
- GSM8392489 Lung, desisobutyryl ciclesonide 4 Lung, desisobutyryl cic…
- GSM8392490 Liver, Vehicle 1 Liver, Vehicle
- GSM8392491 Liver, Vehicle 2 Liver, Vehicle
- GSM8392492 Liver, Vehicle 3 Liver, Vehicle
- GSM8392493 Liver, Vehicle 4 Liver, Vehicle
- GSM8392494 Liver, dexamethasone 1 Liver, dexamethasone
- GSM8392495 Liver, dexamethasone 2 Liver, dexamethasone
- GSM8392496 Liver, dexamethasone 3 Liver, dexamethasone
- GSM8392497 Liver, dexamethasone 4 Liver, dexamethasone
- GSM8392498 Liver, desisobutyryl ciclesonide 1 Liver, desisobutyryl ci…
- GSM8392499 Liver, desisobutyryl ciclesonide 2 Liver, desisobutyryl ci…
- GSM8392500 Liver, desisobutyryl ciclesonide 3 Liver, desisobutyryl ci…
- GSM8392501 Liver, desisobutyryl ciclesonide 4 Liver, desisobutyryl ci…
No close match found for this topic, so these are simply the most-viewed datasets of the same kind.
- GSE14522 Effects of BDNF in Rodent Models of Aging and Alzheimer's Disease 53 samples
- GSE289002 Sex-specific Concordance of Striatal Transcriptional Signatures of Opioid Addiction in Human and Rodent Brains 251 samples
- GSE289038 Extracellular vesicles from antler blastema progenitor cells reverse bone loss and improve aging-related phenotypes in mice and macaques 111 samples
- GSE226502 Epigenetic evolution of the Ly49 gene family 65 samples
- GSE282099 Oligodendroglial hypothesis of autism: the primary role of master regulator gene Baf155 [RNA-Seq] 36 samples
- GSE314711 Sensory nerve-derived CGRP controls osteoclastogenesis by limiting macrophage bioenergetics in bone repair 34 samples
- GSE164440 Evolutionary Analysis of Transcriptional Regulation Mediated by Cdx2 in Rodents 30 samples
- GSE226498 Epigenetic evolution of the Ly49 gene family [ATAC-Seq] 27 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.