Ferroptosis Induced by Omega-3 Docosahexaenoic Acid (DHA) and Erastin in Control MDA-MB-231 Cells (sh-LUC) and MDA-MB-231 Cells with knockdown of IGFBP6 gene (sh-IGFBP6)
RNA-seq (gene expression) · human · 18 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 18 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE282896_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1190962 and SRA study SRP547740. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 18 more — browse all 18 samples with per-sample file links →
- GSE292924 Effects of Normoxia, Hypoxia, Oscillatory Hypoxia, and Lactate on Wild-Type, NOTCH1-Knockdown, and TP53-Knockdown MDA-MB-231 Cells 36 samples shares mda-mb-231, knockdown
- GSE334065 PRMT1 knockdown transcriptome profiling in MDA-MB-231 M3 cells 6 samples shares mda-mb-231, knockdown
- GSE339488 Transcriptomic profiling of BYSL knockdown in MDA-MB-231 human breast cancer cells 6 samples shares mda-mb-231, knockdown
- GSE202868 RNA-seq analysis JARID2 knockdown effect on MDA-MB-231 cells 4 samples shares mda-mb-231, knockdown
- GSE273249 The impact of USP30-AS1 knockdown on gene expression in MDA-MB-231 cell line 2 samples shares mda-mb-231, knockdown
- GSE273248 The impact of HnRNPF knockdown on gene expression in MDA-MB-231 cell line 2 samples shares mda-mb-231, knockdown
- GSE274331 Localization of H2AS40Gc in MDA-MB-231 and expression profile in H2AS40-knockdown cells 11 samples shares mda-mb-231, knockdown
- GSE266011 Effect of CRY2 stabilizer and proteasome inhibitor on the transcription of MDA-MB-231 cells [RNA-seq] 36 samples shares mda-mb-231
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.