RNA-Sequencing of Acute interstitial pneumonia compared with Control Lung
RNA-seq (gene expression) · human · 20 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 20 samples: 15 × Patient vs 5 × ControlGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Integrative Genomic and Transcriptomic Analysis in Acute Interstitial PneumoniaJournal of cellular and molecular medicine · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE283072_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1191812 and SRA study SRP548193. Searching any of these in the dataset finder brings you back here.
Supports a case/control comparison: 15 samples read as cases, 5 as controls.
How we read this: 2 replicated groups read from 20 sample titles; they account for 20 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8655461 Control 1 Control
- GSM8655462 Control 2 Control
- GSM8655463 Control 3 Control
- GSM8655464 Control 4 Control
- GSM8655465 Control 5 Control
- GSM8655466 Patient 1 Patient
- GSM8655467 Patient 2 Patient
- GSM8655468 Patient 3 Patient
- GSM8655469 Patient 4 Patient
- GSM8655470 Patient 5 Patient
- GSM8655471 Patient 6 Patient
- GSM8655472 Patient 7 Patient
- GSM8655473 Patient 8 Patient
- GSM8655474 Patient 9 Patient
- GSM8655475 Patient 10 Patient
- GSM8655476 Patient 11 Patient
- GSM8655477 Patient 12 Patient
- GSM8655478 Patient 13 Patient
- GSM8655479 Patient 14 Patient
- GSM8655480 Patient 15 Patient
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.