New insights into the cis-regulation of the CFTR gene in pancreatic cells [4C-seq]
human · 9 samples
- Organism
- Homo sapiens (human)
- Samples
- 9 samples: 3 × 4C_pCFTR_Capan-1 vs 3 × 4C_pCFTR_Caco-2 vs 3 × 4C_pCFTR_HepG2Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE284199_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
Also filed as BioProject PRJNA1197587. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 9 samples.
How we read this: 3 replicated groups read from 9 sample titles; they account for 9 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8679690 4C_pCFTR_Capan-1_rep1 4C_pCFTR_Capan-1
- GSM8679691 4C_pCFTR_Capan-1_rep2 4C_pCFTR_Capan-1
- GSM8679692 4C_pCFTR_Capan-1_rep3 4C_pCFTR_Capan-1
- GSM8679693 4C_pCFTR_Caco-2_rep1 4C_pCFTR_Caco-2
- GSM8679694 4C_pCFTR_Caco-2_rep2 4C_pCFTR_Caco-2
- GSM8679695 4C_pCFTR_Caco-2_rep3 4C_pCFTR_Caco-2
- GSM8679696 4C_pCFTR_HepG2_rep1 4C_pCFTR_HepG2
- GSM8679697 4C_pCFTR_HepG2_rep2 4C_pCFTR_HepG2
- GSM8679698 4C_pCFTR_HepG2_rep3 4C_pCFTR_HepG2
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- GSE294036 Human Papillomavirus Genomes Associate with Active Host Chromatin during Viral Genome Maintenance [4C-seq] 7 samples shares 4c-seq
- GSE306517 Transcriptomic and functional responses of the cystic fibrosis airway epithelium to CFTR modulator therapy 76 samples shares cftr
- GSE299353 Robust regulatory interplay of enhancers, facilitators, and promoters in a native chromatin context [ChIP-seq; 4C-seq] 18 samples shares 4c-seq
- GSE306617 Clinical, genomic, and spatial transcriptomic features of pancreatic adenosquamous carcinoma 11 samples shares pancreatic
- GSE309861 KLF5 controls subtype-independent highly interactive enhancers in pancreatic cancer to regulate cell survival [HiChIPseq] 10 samples shares pancreatic
- GSE143584 Gene expression from laser capture microdissected epithelium and stroma during pancreatic carcinogenesis 366 samples shares pancreatic
- GSE205154 Bulk RNA-Seq gene expression data for 289 primary and metastatic pancreatic ductal adenocarcinoma (PDAC) tumor samples from FFPE blocks. 289 samples shares pancreatic
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.