DRG bulk RNAseq: Repeated Injections Of Intra-articular Nerve Growth Factor Into The Naive Murine Knee Joint Cause Synovial Inflammation, Knee Sensitization, And Neuronal Sprouting
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- NERVE GROWTH FACTOR IS SUFFICIENT TO CAUSE MULTIPLE OSTEOARTHRITIS-RELEVANT PATHOLOGICAL FEATURES IN NAÏVE MURINE KNEE JOINTSbioRxiv : the preprint server for biology · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE287526_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1213144 and SRA study SRP558568. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 12 more — browse all 12 samples with per-sample file links →
- GSE18751 Genomic sensitization in response to G9a repression following repeated cocaine exposure 12 samples shares sensitization, repeated
- GSE279906 Role of ATF3 in the transcription of GI-SINEs (growth inducing B2-SINEs) in DRG neurons in response to sciatic nerve crush 34 samples shares drg
- GSE230719 AP-1 inhibition in DRG neurons by A-Fos dominant negative construct 30 samples shares drg
- GSE243308 Aryl hydrocarbon receptor restricts axon regeneration of DRG neurons in response to injury 26 samples shares drg
- GSE279047 Heteromeric Kv1.2 channels counteract persistent sodium currents in proprioceptive DRG neurons 23 samples shares drg
- GSE300908 The mechanism of POSTN in psoriasis in vivo or in vitro on dorsal root ganglia(DRG) culture 22 samples shares drg
- GSE307639 Aryl hydrocarbon receptor restricts axon regeneration of DRG neurons in response to injury [DRG_AN00024583] 20 samples shares drg
- GSE309530 RNA-seq profiling in dorsal root ganglian (DRG) after fracture surgery and Protectin DX treatment 18 samples shares drg
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.