The mechanism of POSTN in psoriasis in vivo or in vitro on dorsal root ganglia(DRG) culture
RNA-seq (gene expression) · mouse · 22 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 22 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE300908_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1282655 and SRA study SRP594878. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 22 more — browse all 22 samples with per-sample file links →
- GSE309530 RNA-seq profiling in dorsal root ganglian (DRG) after fracture surgery and Protectin DX treatment 18 samples shares drg, ganglia, dorsal
- GSE327205 RNA-seq analysis of dorsal root ganglia (DRG) from MIA-induced osteoarthritis mice with acupuncture or no treatment: Focus on neuro-immune crosstalk genes 8 samples shares drg, ganglia, dorsal
- GSE262573 Transcriptome analysis by RNA sequencing of primary mouse sensory neurons of the dorsal root ganglia (DRGs) treated with glucosylceramide (GlcCer 24:1) versus vehicle 8 samples shares drg, ganglia, dorsal
- GSE336380 Knockdown and overexpression of injury-responsive transcription factors in cultures of adult mouse dorsal root ganglia 48 samples shares ganglia, culture, dorsal
- GSE336472 Knockdown and knockout of the Integrated Stress Response (ISR) and ATF4 in cultures of adult mouse dorsal root ganglia 28 samples shares ganglia, culture, dorsal
- GSE330238 Bulk RNA-seq of dorsal root ganglion (DRG) neuron with 3 conditions 9 samples shares drg, dorsal
- GSE211622 Desciption of the transcriptome profiles of mouse heart innervating DRG and Nodose Ganglia-derived sensory neurons 9 samples shares drg, ganglia
- GSE290989 Charting Postnatal Heart Development Using In Vivo Single-Cell Functional Genomic [snRNA-Seq] 8 samples shares postn, vivo
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.