Omics of FBXO11-Mediated Proteolysis of BAHD1 Relieves PRC2-dependent Transcriptional Repression in Erythropoiesis
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 60 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 60 samples: 60 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE291329_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1232827 and SRA study SRP149805. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 60 sample titles: 60 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM3832643 BAHD1-V5_R1 (ChIP-seq)
- GSM3832644 BAHD1-V5_R2 (ChIP-seq)
- GSM3832645 BAHD1-V5_R3 (ChIP-seq)
- GSM3832646 F11KO_GATA1_R1 (ChIP-seq)
- GSM3832647 F11KO_GATA1_R2 (ChIP-seq)
- GSM3832648 F11KO_H3K27me3_R1 (ChIP-seq)
- GSM3832649 F11KO_H3K27me3_R2 replicate (ChIP-seq)
- GSM3832650 F11KO_H3K4me3_R1 (ChIP-seq)
- GSM3832651 F11KO_H3K4me3_R2 (ChIP-seq)
- GSM3832652 F11KO_INPUT (ChIP-seq)
- GSM3832653 WT_GATA1_R1 (ChIP-seq)
- GSM3832654 WT_GATA1_R2 (ChIP-seq)
- GSM3832655 WT_H3K27me3_R1 (ChIP-seq)
- GSM3832656 WT_H3K27me3_R2 replicate (ChIP-seq)
- GSM3832657 WT_H3K4me3_R1 replicate (ChIP-seq)
- GSM3832658 WT_H3K4me3_R2 (ChIP-seq)
- GSM3832659 WT_INPUT (ChIP-seq)
- GSM3832660 PB_CD34_D7_H3K27me3_R1 (ChIP-seq)
- GSM3832661 PB_CD34_D7_H3K27me3_R2 (ChIP-seq)
- GSM3832662 PB_CD34_D7_H3K4me3_R1 (ChIP-seq)
- GSM3832663 PB_CD34_D7_H3K4me3_R2 (ChIP-seq)
- GSM3832664 Bulk-NT-1 (RNA-seq)
- GSM3832665 Bulk-NT-2 (RNA-seq)
- GSM3832666 Bulk-NT-3 (RNA-seq)
- GSM3832667 Bulk-NT-4 (RNA-seq)
- GSM3832668 Bulk-F11KO-1 (RNA-seq)
- GSM3832669 Bulk-F11KO-2 (RNA-seq)
- GSM3832670 Bulk-F11KO-3 (RNA-seq)
- GSM3832671 Bulk-F11KO-4 (RNA-seq)
- GSM3832672 Bulk-F11KO-5 (RNA-seq)
- GSM3832673 Bulk-F11KO-6 (RNA-seq)
- GSM3832674 Clone-WT-1 (RNA-seq)
- GSM3832675 Clone-WT-2 (RNA-seq)
- GSM3832676 Clone-WT-3 (RNA-seq)
- GSM3832677 Clone-F11KO-1 (RNA-seq)
- GSM3832678 Clone-F11KO-2 (RNA-seq)
- GSM3832679 Clone-F11KO-3 (RNA-seq)
- GSM3832680 F11KO+shLuc Ctrl-1 (RNA-seq)
- GSM3832681 F11KO+shLuc Ctrl-2 (RNA-seq)
- GSM3832682 F11KO+B1sh1-1 (RNA-seq)
+ 20 more — browse all 60 samples with per-sample file links →
- GSE290717 FBXO11-Mediated Proteolysis of BAHD1 Relieves PRC2-dependent Transcriptional Repression in Erythropoiesis 10 samples shares bahd1, fbxo11-mediated, prc2-dependent, erythropoiesis, proteolysis, repression, relieves
- GSE261119 BRAF inhibitors promote erythropoiesis and hematopoiesis via paradoxical MAPK activation 14 samples shares erythropoiesis
- GSE293474 KMT2D-Mediated H3K4methylation is Essential for GATA1 Transcriptional Activation in Erythropoiesis [ChIP-seq] 24 samples shares erythropoiesis
- GSE272339 Noncoding RNA, ncRNA-a3, epigenetically regulates TAL1 transcriptional program during erythropoiesis (CUT&Run) 15 samples shares erythropoiesis
- GSE272341 Noncoding RNA, ncRNA-a3, epigenetically regulates TAL1 transcriptional program during erythropoiesis (RNA-Seq) 13 samples shares erythropoiesis
- GSE283797 BCL11A is required for normal erythropoiesis 74 samples shares erythropoiesis
- GSE201822 CTCF is selectively required for maintaining chromatin accessibility and gene expression in human erythropoiesis 60 samples shares erythropoiesis
- GSE274928 The glucocorticoid receptor elicited proliferative response in human erythropoiesis is BCL11A-dependent 51 samples shares erythropoiesis
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.