RNA-Seq experiments for isolated mice tissues in both WT and Mut mice
RNA-seq (gene expression) · mouse · 32 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 32 samples: 8 conditions, mostly with about 4 replicates eachGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Macrophage-Expressed Micropeptide Smim30 Maintains Adipose Tissue Insulin Sensitivity and Safeguards Systemic Metabolic HomeostasisDiabetes · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE291697_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1234674 and SRA study SRP569682. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 32 samples.
How we read this: 8 replicated groups read from 32 sample titles; they account for 32 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8840199 BAT_WT_1 BAT_WT
- GSM8840200 BAT_WT_2 BAT_WT
- GSM8840201 BAT_WT_3 BAT_WT
- GSM8840202 BAT_WT_4 BAT_WT
- GSM8840203 BAT_Mut_1 BAT_Mut
- GSM8840204 BAT_Mut_2 BAT_Mut
- GSM8840205 BAT_Mut_3 BAT_Mut
- GSM8840206 BAT_Mut_4 BAT_Mut
- GSM8840207 Heart_WT_1 Heart_WT
- GSM8840208 Heart_WT_2 Heart_WT
- GSM8840209 Heart_WT_3 Heart_WT
- GSM8840210 Heart_WT_4 Heart_WT
- GSM8840211 Heart_Mut_1 Heart_Mut
- GSM8840212 Heart_Mut_2 Heart_Mut
- GSM8840213 Heart_Mut_3 Heart_Mut
- GSM8840214 Heart_Mut_4 Heart_Mut
- GSM8840215 Liver_WT_1 Liver_WT
- GSM8840216 Liver_WT_2 Liver_WT
- GSM8840217 Liver_WT_3 Liver_WT
- GSM8840218 Liver_WT_4 Liver_WT
- GSM8840219 Liver_Mut_1 Liver_Mut
- GSM8840220 Liver_Mut_2 Liver_Mut
- GSM8840221 Liver_Mut_3 Liver_Mut
- GSM8840222 Liver_Mut_4 Liver_Mut
- GSM8840223 Muscle_WT_1 Muscle_WT
- GSM8840224 Muscle_WT_2 Muscle_WT
- GSM8840225 Muscle_WT_3 Muscle_WT
- GSM8840226 Muscle_WT_4 Muscle_WT
- GSM8840227 Muscle_Mut_1 Muscle_Mut
- GSM8840228 Muscle_Mut_2 Muscle_Mut
- GSM8840229 Muscle_Mut_3 Muscle_Mut
- GSM8840230 Muscle_Mut_4 Muscle_Mut
- GSE264105 Plate-based scRNA-seq of plasma-positive microglia and plasma-negative microglia in young mice 1111 samples shares rna-seq
- GSE326100 scRNA-seq of mouse cochlea organoid cells 768 samples shares rna-seq
- GSE311449 Single cell RNA-seq of mouse brain vascular cells with Smart-seq2 method 391 samples shares rna-seq
- GSE319614 Bulk RNA-seq transcriptome profiling of hippocampus across 17 autism spectrum disorder mouse models 269 samples shares rna-seq
- GSE228960 Bulk RNA-Seq from kidneys of uninephrectomized db/db mice as a model of severe diabetic kidney disease 28 samples shares rna-seq
- GSE326452 Bulk RNA-seq of mouse brain following closed head injury: role of IL-1R1 signaling 200 samples shares rna-seq
- GSE279927 RNA next-generation sequencing of cardiac fibroblasts isolated from young and old mice 7 days post-MI 25 samples shares isolated
- GSE330674 Glucocorticoid resistance during chronic social stress in mice: RNA-seq of prefrontal cortex 24 samples shares rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.