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Single-cell transcriptome analysis of low-dose radiotherapy-mediated alleviation of LPS-induced acute lung injury

GSE292681 Mus musculus Expression profiling by high throughput sequencing 4 samples Submitted 2025/03/28 Platform GPL24247
Summary
Acute lung injury (ALI), a condition with a high incidence and mortality rate worldwide, is a type of acute respiratory failure characterized by infiltrative lesions in the lungs. Low-dose radiation therapy (LDRT), which uses less than 1 Gy X-ray per session, has been tested for its clinical feasibility in suppressing lung inflammation in conditions that cause ALI. However, a mechanistic understanding of how LDRT alleviates inflammation in the lungs and restores balance in the immune environment is still lacking. In this study, we assessed the immunomodulatory effects of LDRT using single-cell RNA sequencing (scRNA-seq) and flow cytometry in a lipopolysaccharide (LPS)-induced ALI mouse model. LDRT with 1 Gy X-rays reduced the lung inflammation, immunostimulatory cells such as M1 macrophages, and pro-inflammatory cytokines such as interleukin 6 in the bronchoalveolar lavage fluid, while increasing the levels of immunosuppressive cells such as M2 macrophages and the anti-inflammatory cytokine TGF-β. Furthermore, scRNA-seq analysis of whole lung tissues confirmed that LDRT reduced the number of macrophages and neutrophils and downregulated the genes involved in inflammatory response pathways. Flow cytometry showed that LDRT effectively eliminated pro-inflammatory immune cells via apoptosis. Our findings underscore the potential utility of LDRT in ALI treatment by rebalancing immune homeostasis.
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Direct links to NCBI, no account and no request form: the whole study as GSE292681_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 4 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1240799 and SRA study SRP572435. Searching any of these in the dataset finder brings you back here.

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