Regulation of endothelial cell chromatin availability and transcription factor activity in arterial-venous specification
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 18 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 18 samples: 5 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Regulation of endothelial cell chromatin availability and transcription factor activity during arterial-venous specificationDevelopment (Cambridge, England) · 2026
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE293308_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1243980 and SRA study SRP575006. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 15 samples.
How we read this: 5 replicated groups read from 18 sample titles; they account for 15 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8880112 Endothelial Cell, Early G1, rep1 Endothelial Cell, Early…
- GSM8880113 Endothelial Cell, Early G1, rep2 Endothelial Cell, Early…
- GSM8880114 Endothelial Cell, Early G1, rep3 Endothelial Cell, Early…
- GSM8880115 Endothelial Cell, Late G1, rep1 Endothelial Cell, Late …
- GSM8880116 Endothelial Cell, Late G1, rep2 Endothelial Cell, Late …
- GSM8880117 Endothelial Cell, Late G1, rep3 Endothelial Cell, Late …
- GSM8880118 Endothelial Cell, Early G1, SOX17 antibody
- GSM8880119 Endothelial Cell, Late G1, SOX17 antibody
- GSM8880120 Endothelial Cell, IgG antibody
- GSM8880121 Retinal EC, P6, Early G1, rep1 Retinal EC, P6, Early G…
- GSM8880122 Retinal EC, P6, Early G1, rep2 Retinal EC, P6, Early G…
- GSM8880123 Retinal EC, P6, Early G1, rep3 Retinal EC, P6, Early G…
- GSM8880124 Retinal EC, P6, Late G1, rep1 Retinal EC, P6, Late G1,
- GSM8880125 Retinal EC, P6, Late G1, rep2 Retinal EC, P6, Late G1,
- GSM8880126 Retinal EC, P6, Late G1, rep3 Retinal EC, P6, Late G1,
- GSM8880127 Retinal EC, P6, Late G1, rep4 Retinal EC, P6, Late G1,
- GSM8880128 Retinal EC, P6 Retinal EC, P
- GSM8880129 Retinal EC, P15 Retinal EC, P
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- GSE89303 Global transcriptional analysis and genome-wide analysis of chromatin state in extended pluripotent stem cells, primed pluripotent stem cells, and naïve pluripotent stem cells 20 samples shares transcription, chromatin
- GSE202126 Single-cell Total-RNA Profiling Unveils Regulatory Hubs of Transcription Factors 1089 samples shares transcription, factor
- GSE267145 The transcription factor ZNF469 regulates collagen production in liver fibrosis 508 samples shares transcription, factor
- GSE246923 Opposing tumor cell-intrinsic and -extrinsic roles of the IRF1 transcription factor in anti-tumor immunity 49 samples shares transcription, factor
- GSE218867 ZBTB24 is a conserved multifaceted transcription factor at genes and centromeres that governs the DNA methylation state and expression of satellite repeats 40 samples shares transcription, factor
- GSE94325 A family of double-homeodomain transcription factors promotes zygotic genome activation in placental mammals. 32 samples shares transcription, factor
- GSE234684 MEF2B C-terminal mutations enhance transcriptional activity and stability to drive B cell lymphomagenesis 16 samples shares transcription, activity
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.