ZBTB24 is a conserved multifaceted transcription factor at genes and centromeres that governs the DNA methylation state and expression of satellite repeats
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 40 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 40 samples: 40 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- ZBTB24 is a conserved multifaceted transcription factor at genes and centromeres that governs the DNA methylation state and expression of satellite repeatsHuman molecular genetics · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE218867_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA906034 and SRA study SRP410194. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 40 sample titles: 40 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM6757871 mES cells, WT1, 2i
- GSM6757872 mES cells, WT2, 2i
- GSM6757873 mES cells, mt1, 2i
- GSM6757874 mES cells, mt2, 2i
- GSM6757875 mES cells, WT1, d3
- GSM6757876 mES cells, WT2, d3
- GSM6757877 mES cells, mt1, d3
- GSM6757878 mES cells, mt2, d3
- GSM6757932 mES cells, WT1, 2i, input
- GSM6757933 mES cells, WT2, 2i, input
- GSM6757934 mES cells, WT1, d3, input
- GSM6757935 mES cells, WT2, d3, input
- GSM6757936 mES cells, WT1, 2i, ZBTB24
- GSM6757937 mES cells, WT2, 2i, ZBTB24
- GSM6757938 mES cells, WT1, d3, ZBTB24
- GSM6757939 mES cells, WT2, d3, ZBTB24
- GSM6757940 LCLs, WT_2591, input_ZBTB24
- GSM6757941 LCLs, WT_2592, input_ZBTB24
- GSM6757942 LCLs, WT_ESGO, input_ZBTB24
- GSM6757943 LCLs, WT_2591, input_IgG
- GSM6757944 LCLs, WT_2592, input_IgG
- GSM6757945 LCLs, WT_ESGO, input_IgG
- GSM6757946 LCLs, WT_2591, IgG
- GSM6757947 LCLs, WT_2592, IgG
- GSM6757948 LCLs, WT_ESGO, IgG
- GSM6757949 LCLs, WT_2591, ZBTB24
- GSM6757950 LCLs, WT_2592, ZBTB24
- GSM6757951 LCLs, WT_ESGO, ZBTB24
- GSM6757984 mES cells, WT1, 2i [RNA-Seq]
- GSM6757985 mES cells, WT2, 2i [RNA-Seq]
- GSM6757986 mES cells, mt1, 2i [RNA-Seq]
- GSM6757987 mES cells, mt2, 2i [RNA-Seq]
- GSM6757988 mES cells, WT1, d3 [RNA-Seq]
- GSM6757989 mES cells, WT2, d3 [RNA-Seq]
- GSM6757990 mES cells, mt1, d3 [RNA-Seq]
- GSM6757991 mES cells, mt2, d3 [RNA-Seq]
- GSM6757992 LCL_2591 [RNA-Seq]
- GSM6757993 LCL_ESGO [RNA-Seq]
- GSM6757994 LCL_pD_ICF2 [RNA-Seq]
- GSM6757995 LCL_pV_ICF2 [RNA-Seq]
- GSE218866 ZBTB24 is a conserved multifaceted transcription factor at genes and centromeres that governs the DNA methylation state and expression of satellite repeats [RNA-Seq] 12 samples shares zbtb24, transcription, multifaceted, centromeres, methylation, conserved, satellite, governs
- GSE287346 MafB is a conserved transcriptional regulator of macrophage development and identity across tissues and species [CUT&Run] 33 samples shares transcription, conserved
- GSE268853 Conserved Transcriptional Circuits Regulate Cardiac Fibroblast-Mediated Fibrosis 12 samples shares transcription, conserved
- GSE202126 Single-cell Total-RNA Profiling Unveils Regulatory Hubs of Transcription Factors 1089 samples shares transcription
- GSE267145 The transcription factor ZNF469 regulates collagen production in liver fibrosis 508 samples shares transcription
- GSE102556 Sex-specific Transcriptional Signatures in Human Depression 341 samples shares transcription
- GSE260456 DOT1L provides transcriptional memory through PRC1.1 antagonism [RNA-seq] 180 samples shares transcription
- GSE226003 Disruption of RNAPII transcription elongation links Oncogenic splicing factor mutations to replciation stress and targetable alterations in chromatin landscape. 170 samples shares transcription
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.